Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C18
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68006-1|CAA91998.1|  251|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>Z68006-1|CAA91998.1|  251|Caenorhabditis elegans Hypothetical
           protein K09C8.2 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 249 MSKTITSVGNFLFCFTFGVKIIY*NYSLSCKASKKFCTLIKCSIGH 112
           +S +   VG    C    +  IY  Y LS    +K CT +   +GH
Sbjct: 57  VSVSFVHVGAVFVCIVILLSTIYATYGLSVMNLRKMCTALFIWLGH 102


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 381 YLITSFS*LGRP*HIFALSAIVLHMHETEAIRSAVFFVTYFTGVMSKTITSVGNFLFCFT 202
           YL+ SFS LG    +++    ++  +     RS V F       +SK +  VG  L C +
Sbjct: 45  YLMFSFSALGV---VYSCIDFIVKPNSHITERSFVIFSVLRVTKLSKPVAEVGLSLMCAS 101

Query: 201 FGV 193
           FG+
Sbjct: 102 FGI 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,045,753
Number of Sequences: 27780
Number of extensions: 224835
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)