Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C17
         (592 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3ERM7 Cluster: Endonuclease IV; n=1; Leptospirillum sp...    34   2.9  
UniRef50_Q2UP53 Cluster: Permease of the major facilitator super...    32   8.7  

>UniRef50_A3ERM7 Cluster: Endonuclease IV; n=1; Leptospirillum sp.
           Group II UBA|Rep: Endonuclease IV - Leptospirillum sp.
           Group II UBA
          Length = 317

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 270 ENCKLLASRSFHEVPQIYKELVVGLWCEAPGPRG-RGWSPLPDAAYYSG 413
           ++C LLAS +    P+ Y+E V+  W EA GP G R W  L DA +  G
Sbjct: 191 DSCHLLASGAEIRNPRSYEE-VLSAWTEAAGPGGIRAWH-LNDALFERG 237


>UniRef50_Q2UP53 Cluster: Permease of the major facilitator
           superfamily; n=4; Aspergillus|Rep: Permease of the major
           facilitator superfamily - Aspergillus oryzae
          Length = 508

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 480 LHITLCSCVLPLFHTTCVKAFYIQNNRRRQAGATTHGLADQG 355
           +  TLC  VL +F   C+  +YI  N+RR      HG+ ++G
Sbjct: 445 IEATLCGLVLGVFFLGCLFVYYIWENKRRD---RQHGVMNEG 483


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,428,671
Number of Sequences: 1657284
Number of extensions: 12733642
Number of successful extensions: 27071
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27070
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)