Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C17
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    26   3.6  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   3.6  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   6.2  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   8.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   8.3  

>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 345 IAQLLVPCKFEEPHENFSKPIIYNF-HIL 262
           ++ LL+ CK+EE H     P IYNF H++
Sbjct: 243 LSALLIACKYEEIH----PPSIYNFAHVV 267


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 55  NPRADSAAGDPLFRAPPP 2
           NP   +AAG PL+ A PP
Sbjct: 385 NPSVSTAAGTPLYLASPP 402


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 199 PQETPFATDPGLKLF*FHKPE*DVKIVNYW 288
           P E P+A    + +F  H+P+ D+K   YW
Sbjct: 129 PGENPYADI--ISIFPLHQPKFDIKWSKYW 156


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 242 NNFNPGSVAKGVSCGSKHHKKTALYTPPNCT 150
           +N +P S+AK  S  SK  K+  L   P C+
Sbjct: 133 SNSSPASIAKKTSRDSKKRKREDLVHCPACS 163


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 479 CTSHFVAVSCHYFIQPVSKHSISRIIGGVRQGRPP 375
           C  H  + +CH+F + V   ++S I        PP
Sbjct: 119 CIFHDASGACHFFFKEVGNWTVSSIALPSNLANPP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,495
Number of Sequences: 5004
Number of extensions: 54327
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)