Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C17
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0030 - 15687877-15688083,15688177-15688471,15688551-156887...    29   3.7  
05_01_0444 + 3520227-3520398,3520493-3520673,3521465-3521618,352...    28   4.8  
08_01_0168 - 1385439-1385979,1386081-1387438                           28   6.4  
08_01_0175 - 1497700-1498459,1498546-1499939                           27   8.5  
08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220           27   8.5  
08_01_0164 - 1358627-1359209,1359307-1359473                           27   8.5  
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    27   8.5  

>06_03_0030 -
           15687877-15688083,15688177-15688471,15688551-15688721,
           15688968-15689026
          Length = 243

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 476 TSHFVAVSCHYFIQPVSKHSISRIIGGVRQGRPPTASR-TRGLAP 345
           T  F    CH+ + P  +++I+++   V+   PP   +  + LAP
Sbjct: 193 TDEFCGFICHHVVDPTGEYNINKVPQRVQSSVPPPRDQAAKKLAP 237


>05_01_0444 +
           3520227-3520398,3520493-3520673,3521465-3521618,
           3522222-3522326,3522415-3522495,3522802-3522889,
           3523204-3523286,3524370-3524480,3524681-3524827
          Length = 373

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 12  ALNSGSPAAESARGLISAVTGQICKILHY--LKDIFY 116
           A+++ SPAA SAR  +  V   +    HY  +K +FY
Sbjct: 81  AVDAASPAATSARSALRVVDSFVVPRFHYDPIKKVFY 117


>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 303 HEVPQIYKELVVGLWCEAPGPRGR 374
           ++V ++ + +V+GLWC  P P  R
Sbjct: 594 YDVTEMERVIVLGLWCAHPDPSAR 617


>08_01_0175 - 1497700-1498459,1498546-1499939
          Length = 717

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 303 HEVPQIYKELVVGLWCEAPGPRGR 374
           ++V ++ + + VGLWC  P P  R
Sbjct: 606 YDVSEMERVITVGLWCAHPDPSAR 629


>08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220
          Length = 629

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 303 HEVPQIYKELVVGLWCEAPGP 365
           ++V ++ + +VVGLWC  P P
Sbjct: 607 YDVSEMERVIVVGLWCAHPDP 627


>08_01_0164 - 1358627-1359209,1359307-1359473
          Length = 249

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 303 HEVPQIYKELVVGLWCEAPGPRGR 374
           ++V ++   ++VGLWC  P P  R
Sbjct: 197 YDVSELEHVIIVGLWCVHPDPSAR 220


>08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,
            1307360-1308768
          Length = 1303

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 303  HEVPQIYKELVVGLWCEAPGPRGR 374
            ++  ++ + +V+GLWC  P P  R
Sbjct: 1127 YDAAEMERVIVIGLWCAHPDPNAR 1150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,991,461
Number of Sequences: 37544
Number of extensions: 351233
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)