Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C17
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    31   0.46 
Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 360 GPRGRGWSPLPDAA-YYSGYRML 425
           G RG  WSP+P A  YY GYR L
Sbjct: 94  GVRGLSWSPVPGAVMYYIGYRTL 116


>Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical
           protein K03D7.8 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 306 HENFSKPIIYNFHILF 259
           HE+FSKP++Y+F + +
Sbjct: 135 HESFSKPLVYSFFLQY 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,232
Number of Sequences: 27780
Number of extensions: 308567
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)