Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C17
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 51  GLISAVTGQICKILHYLKD 107
           GL+   T  IC  L YLKD
Sbjct: 173 GLVLYTTPSICTALGYLKD 191


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 51  GLISAVTGQICKILHYLKD 107
           GL+   T  IC  L YLKD
Sbjct: 168 GLVLYTTPSICTALGYLKD 186


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 524 KMRDHIRFFFN*RWICTSHFVAVSCHYFIQPVSKH 420
           ++ D IR F +  +    HF A+   YF+    K+
Sbjct: 78  RLFDKIRVFLDEDYSSAEHFTALGNFYFVHESLKN 112


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 282 IYNFHILFWFM 250
           +Y F ILFW++
Sbjct: 776 VYAFGILFWYL 786


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 282 IYNFHILFWFM 250
           +Y F ILFW++
Sbjct: 814 VYAFGILFWYL 824


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,811
Number of Sequences: 438
Number of extensions: 4152
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)