Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C16
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   1.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.1  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 454 IDERSVVRKWPESQSISKVHF 392
           +++RSVVR+W     +S  HF
Sbjct: 378 VEQRSVVRRWQVQDGVSTTHF 398


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 486 RLTLWLLGHVVLMNVAWFGSGRSLKVSQKSTFK 388
           +L  WL  ++    + +F S R++ VS K +FK
Sbjct: 126 KLAPWLKFYITPWVMGFFDSDRAVSVSAKDSFK 158


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
 Frame = +1

Query: 412 FETPATSEPRYVHQYDVTEQPERQSSI------VVPQPKYGTTSTQQAMVGYLSNVPMQI 573
           FETPA S+P     Y    Q     SI      +VP+P   T S   A       VP + 
Sbjct: 138 FETPAQSDPILFSSYPHAAQARVDPSISKDLYNMVPRPDANTVSPHAARSASSLPVPKEA 197

Query: 574 YLVP 585
              P
Sbjct: 198 SETP 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,646
Number of Sequences: 5004
Number of extensions: 48763
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)