Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C16
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 30 1.3
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 29 3.1
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 29 4.1
03_06_0604 - 35006004-35008580 29 4.1
01_01_0680 + 5217633-5219072 29 4.1
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 28 5.4
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 28 7.1
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 28 7.1
08_01_1024 - 10349061-10349200,10349373-10350040,10350478-103505... 27 9.4
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 27 9.4
02_02_0457 + 10503801-10507358 27 9.4
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +1
Query: 265 EKKIELQDIEDDNLKSEKQKNADNAEQRSQDSSGGLVPLEFLKSGLLRYFETPATSEPRY 444
EK + I N+ S+ + + + +S++ + PL +K G R F+T T E +
Sbjct: 173 EKNEGSESISSGNIGSDAEPKSKEVQPKSEERTTWN-PLNLIKIG--RDFDTFMTGEAGH 229
Query: 445 VHQYDVTEQPERQSSIVV 498
+ D+ EQP + I++
Sbjct: 230 ENVPDLIEQPTGKGRIII 247
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 409 YFETPATSEPRYVHQYDVTEQPERQSSIVVPQPKYGTTSTQQAMVGYLSNVPMQIY-LVP 585
YF PA P + P+R ++V Q G QQA S+ Q Y + P
Sbjct: 354 YFNIPAP--PGAERTLYPSMDPQRMGALVKSQEGDGKPGPQQAAQAQASSSSGQSYPMPP 411
Query: 586 QYYNG 600
QYY+G
Sbjct: 412 QYYHG 416
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +1
Query: 265 EKKIELQDIEDDNLKSEKQKNADNAEQRSQDSSGGLVPLEFLKSGLLRYFETPATSEPRY 444
E++IE ++IE++ + E +++ D E+ + V E + ET S+ +
Sbjct: 35 EEEIEYEEIEEEIEEEEVEEDEDVVEEVEE------VDEEEDEEEEEESDETEGVSKTKG 88
Query: 445 VHQYDVTEQPERQSSIVVP 501
VHQ DVTE+ + + +P
Sbjct: 89 VHQKDVTEKGKHAELLALP 107
>03_06_0604 - 35006004-35008580
Length = 858
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 505 PKYGTTSTQQAMVGYLSNVPMQ 570
PKYG S Q A++ Y S P+Q
Sbjct: 463 PKYGAASAQYALLEYASGAPVQ 484
>01_01_0680 + 5217633-5219072
Length = 479
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 310 SEKQKNADNAEQRSQDSSGGLVPLEFLKSGLLRYFETPATSEPRYVHQYDVTEQPERQSS 489
SE +K + + + G VP E +L YF+ P+ P+++ Y E P+ Q
Sbjct: 201 SEVKKGSWDCPDKYCRHYNGSVPFEERVDAILGYFDLPSDEMPQFLTLY--FEDPDHQGH 258
Query: 490 IVVP 501
V P
Sbjct: 259 QVGP 262
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 265 EKKIELQDIEDDNLKSEKQKNADNAEQRSQDSSGGLVPLEFLKSGLLRYFETPATSEPRY 444
E+++E ++IE + ++ E ++ + E V E + ET S+ +
Sbjct: 437 EEEVEEEEIEYEEIEEEIEEEEEVEEDEDVVEEVEEVDEEEDEEEDEESDETEGVSKTKG 496
Query: 445 VHQYDVTEQPERQSSIVVP 501
VHQ DVTE+ + + +P
Sbjct: 497 VHQKDVTEKGKHAELLALP 515
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 409 YFETPATSEPRYVHQYDVTEQPERQSSIVVPQPKYGTTSTQQAMVGYLSNVPMQIY--LV 582
YF PA P + P+R ++V Q G QQA G S+ Q Y
Sbjct: 354 YFNIPAP--PAAERTLYPSMDPQRMGALVESQEGDGKPGPQQAGQGQASSSSGQSYPEPP 411
Query: 583 PQYYNGAQ 606
P YY+G Q
Sbjct: 412 PPYYHGGQ 419
>01_06_1699 -
39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 518 LLRLSKRWSVIYLMYQCRFI*SLNIITVLKNRQLIR 625
LLRL +VIY+ +Q F+ +++ V+K+ ++++
Sbjct: 704 LLRLMSSKTVIYVTHQLEFLRDADLVLVMKDGRIVQ 739
>08_01_1024 -
10349061-10349200,10349373-10350040,10350478-10350591,
10351956-10352032
Length = 332
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 2 HEANVLRFPSAVCMDRGAVVRNAG 73
HE V+RFP A+ +D+GA + AG
Sbjct: 138 HERFVVRFPEAMPLDKGAPLLCAG 161
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 256 AGAEKKIELQDIEDDNLKSEKQKNADNAEQRSQDSSGG 369
AGAE+ I+ ++ K +K+K+ D+ + D+ GG
Sbjct: 470 AGAEETIQEDGDQEGQKKKKKKKSKDSEDSPVADADGG 507
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 134 RTIVDMYTASLPQSVVVCPHIRRCERLLLCPYIQLKEILIHL 9
R IV YT LP S+ H+R + CP+ L + HL
Sbjct: 627 RVIVCPYTKELPASIGKLKHLRYLKISGDCPFKSLPQEFCHL 668
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,336,784
Number of Sequences: 37544
Number of extensions: 286042
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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