Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C16
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    29   3.7  
U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell ...    29   3.7  
AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.    29   3.7  

>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
 Frame = +1

Query: 262 AEKKIELQDIEDDNLKSEKQKNADNAEQRSQDSSG------GLVPLEF----LKSGLLRY 411
           AEKK    D      K++K++  + AE   Q  +G      G +P  +    ++SG   +
Sbjct: 36  AEKKAAASDKPVKEAKAKKEQTVEAAEPVDQTPTGQRKKIDGEIPAAYFPGYVESGWYSW 95

Query: 412 FETPATSEPRYVHQYDVTEQPERQSSIVVPQP 507
           +E     +P Y+ + +    P    ++ +P P
Sbjct: 96  WEKEGFFKPEYIDKLNPGSNPADSFTVCIPPP 127


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 169 CWCCDYSGIENNII 210
           CW CD++GI++N+I
Sbjct: 371 CWDCDFTGIKSNVI 384


>U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell
           lineage protein 26 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 169 CWCCDYSGIENNII 210
           CW CD++GI++N+I
Sbjct: 337 CWDCDFTGIKSNVI 350


>AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 169 CWCCDYSGIENNII 210
           CW CD++GI++N+I
Sbjct: 337 CWDCDFTGIKSNVI 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,755
Number of Sequences: 27780
Number of extensions: 266387
Number of successful extensions: 972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)