Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C15
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   192   2e-50
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   187   1e-48
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   2.1  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   3.6  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   3.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.3  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  192 bits (469), Expect = 2e-50
 Identities = 94/137 (68%), Positives = 108/137 (78%), Gaps = 1/137 (0%)
 Frame = +1

Query: 190 YLFQYDSTHGRFKGTVRPNG-HLVVNGKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFTT 366
           Y+F+YDSTHGRF+G+V   G  LV++G          P  I W  +GAEYV+ESTGVFTT
Sbjct: 45  YMFKYDSTHGRFEGSVETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTT 104

Query: 367 TDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVI 546
            + ASAHL GGAK+VIISAPS DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI
Sbjct: 105 KETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVI 164

Query: 547 HDNFELIEGLMTTVHAT 597
           +D F + EGLMTTVHAT
Sbjct: 165 NDTFGIEEGLMTTVHAT 181



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 72  KIGINGFGRIGRLVLRASIDKG-ADVVAINDPSLVLTTXGLPFPV*FDSRSFQGYREAE 245
           K+GINGFGRIGR+VLR +I  G   VVA+NDP + L      F        F+G  E +
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETK 63


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  187 bits (455), Expect = 1e-48
 Identities = 91/137 (66%), Positives = 107/137 (78%), Gaps = 1/137 (0%)
 Frame = +1

Query: 190 YLFQYDSTHGRFKGTVR-PNGHLVVNGKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFTT 366
           Y+F+YDSTHGRF G+V   +G LV++G          P  I W  +GA+YV+ESTGVFTT
Sbjct: 45  YMFKYDSTHGRFDGSVEIKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTT 104

Query: 367 TDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVI 546
            + ASAHL GGAK+VIISAPS DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI
Sbjct: 105 QETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVI 164

Query: 547 HDNFELIEGLMTTVHAT 597
           +D F + EGLMTTVHAT
Sbjct: 165 NDTFGIEEGLMTTVHAT 181



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/36 (66%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +3

Query: 72  KIGINGFGRIGRLVLR-ASIDKGADVVAINDPSLVL 176
           K+GINGFGRIGR+VLR A + K   VVAINDP + L
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDL 40


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 79  ELTVLVASVAWCSVLRLIRV 138
           +L+V VA +AWC   RL+R+
Sbjct: 122 KLSVAVAELAWCPKSRLVRI 141


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 265 GKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFTTTDKASAHLVG 396
           G+    L     C IP  +   EY ++  G+F   +  SA++ G
Sbjct: 216 GEDDTGLFNFADCKIPGIENEMEYHMDHQGIFQVYENDSAYIAG 259


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 134 LINRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHSTFTLHK 9
           LI  + +HQ+T+ TKT  +   H+  ++    +  S   ++K
Sbjct: 11  LIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINK 52


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -1

Query: 199 GKGRPXVVKTNEGSLIATTSAPLSIEARSTRRPMRPKPLIPIFDMIMVRVYFRNEVTQRS 20
           G+GRP  +K  EGS      +PL +      +  R +P +   +  +      N VT  S
Sbjct: 203 GRGRPRKIKPEEGSSSQNGLSPLVV---LPAKRGRGRPPLHRSEQKIANTPISNNVTVES 259

Query: 19  LSTSL 5
             T+L
Sbjct: 260 TGTNL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,704
Number of Sequences: 5004
Number of extensions: 52951
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)