Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C15
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 205 2e-53
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 200 7e-52
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 176 1e-44
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 162 2e-40
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 158 4e-39
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 135 3e-32
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 116 1e-26
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 29 2.1
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 29 3.7
12_01_0990 + 10052430-10052895,10053633-10054219 28 6.5
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 28 6.5
07_03_1666 + 28482262-28482385,28482475-28482992 27 8.6
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 205 bits (501), Expect = 2e-53
Identities = 95/138 (68%), Positives = 112/138 (81%), Gaps = 2/138 (1%)
Frame = +1
Query: 190 YLFQYDSTHGRFKGTVR--PNGHLVVNGKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFT 363
Y+F+YDSTHG FKG+++ + L +NGKK P IPWG GAEYVVES+GVFT
Sbjct: 180 YMFKYDSTHGPFKGSIKVVDDSTLEINGKKVTITSKRDPADIPWGNFGAEYVVESSGVFT 239
Query: 364 TTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 543
TT+KASAHL GGAKKV+ISAPSADAPMFVVGVN ++YDP V+SNASCTTNCLAPLAKV
Sbjct: 240 TTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKV 299
Query: 544 IHDNFELIEGLMTTVHAT 597
+H+ F ++EGLMTTVHAT
Sbjct: 300 VHEEFGIVEGLMTTVHAT 317
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Frame = +3
Query: 69 SKIGINGFGRIGRLVLRASIDK-GADVVAINDP 164
+K+GINGFGRIGRLVLR + + +VVA+NDP
Sbjct: 139 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDP 171
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 200 bits (488), Expect = 7e-52
Identities = 94/138 (68%), Positives = 110/138 (79%), Gaps = 2/138 (1%)
Frame = +1
Query: 190 YLFQYDSTHGRFKGTVR--PNGHLVVNGKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFT 363
Y+F+YDSTHG FKGT++ L +NGKK P IPWG GAEYVVES+GVFT
Sbjct: 121 YMFKYDSTHGPFKGTIKVVDESTLEINGKKISVTSKRDPSDIPWGNFGAEYVVESSGVFT 180
Query: 364 TTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 543
TT+KASAHL GGA+KV+ISAPSADAPMFVVGVN + Y+PS V+SNASCTTNCLAPLAK+
Sbjct: 181 TTEKASAHLKGGARKVVISAPSADAPMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKI 240
Query: 544 IHDNFELIEGLMTTVHAT 597
+H+ F + EGLMTTVHAT
Sbjct: 241 VHEEFGIAEGLMTTVHAT 258
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/33 (63%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Frame = +3
Query: 69 SKIGINGFGRIGRLVLRASIDK-GADVVAINDP 164
+K+GINGFGRIGRLVLR + ++ +VVA+NDP
Sbjct: 80 TKVGINGFGRIGRLVLRIATNRDDIEVVAVNDP 112
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 176 bits (428), Expect = 1e-44
Identities = 86/138 (62%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Frame = +1
Query: 190 YLFQYDSTHGRFKG-TVR-PNGHLVVNGKKTVSLRGIX-PCXIPWGQAGAEYVVESTGVF 360
Y+F+YD+ HG++K V+ + ++ G+K V++ G P IPWG+ GAE+VVESTGVF
Sbjct: 93 YMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTGVF 152
Query: 361 TTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAK 540
T DKA+AHL GGAKKV+ISAPS DAPMFVVGVN + Y P ++SNASCTTNCLAPLAK
Sbjct: 153 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAK 212
Query: 541 VIHDNFELIEGLMTTVHA 594
VI+D F ++EGLMTTVHA
Sbjct: 213 VINDRFGIVEGLMTTVHA 230
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +3
Query: 72 KIGINGFGRIGRLVLRASIDK-GADVVAINDP 164
KIGINGFGRIGRLV R ++ ++VA+NDP
Sbjct: 5 KIGINGFGRIGRLVARVALQSDDVELVAVNDP 36
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 162 bits (393), Expect = 2e-40
Identities = 75/99 (75%), Positives = 83/99 (83%)
Frame = +1
Query: 298 PCXIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYD 477
P IPW +AGAEYVVESTGVFT +KA+AHL GGAKKV+ISAPS DAPMFV GVN + Y
Sbjct: 107 PDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYT 166
Query: 478 PSYKVISNASCTTNCLAPLAKVIHDNFELIEGLMTTVHA 594
++SNASCTTNCLAPLAKVIHDNF +IEGLMTTVHA
Sbjct: 167 SDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 205
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +3
Query: 72 KIGINGFGRIGRLVLRASI-DKGADVVAINDPSLVLTTXGLPFPV*FDS 215
KIGINGFGRIGRLV R ++ + ++VA+NDP +TT + + +D+
Sbjct: 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDP--FITTDYMTYMFKYDT 51
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 158 bits (383), Expect = 4e-39
Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 17/152 (11%)
Frame = +1
Query: 190 YLFQYDSTHGRFKG-TVR-PNGHLVVNGKKTVSLRGIX-PCXIPWGQAGAEYVVESTGVF 360
Y+F+YD+ HG++K V+ + ++ G K V++ G P IPW AGAEYVVESTGVF
Sbjct: 50 YMFKYDTVHGQWKHHEVKVKDSKTLIFGTKEVAVFGCRNPEEIPWAAAGAEYVVESTGVF 109
Query: 361 TTTDKASAHLVG--------------GAKKVIISAPSADAPMFVVGVNLEAYDPSYKVIS 498
T DKA+AHL G GAKKV+ISAPS DAPMFVVGVN + Y ++S
Sbjct: 110 TDKDKAAAHLKGQAVDLFSIIFHMQGGAKKVVISAPSKDAPMFVVGVNEKEYKSDVNIVS 169
Query: 499 NASCTTNCLAPLAKVIHDNFELIEGLMTTVHA 594
NASCTTNCLAPLAKVI+D F ++EGLMTTVHA
Sbjct: 170 NASCTTNCLAPLAKVINDRFGIVEGLMTTVHA 201
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 87 GFGRIGRLVLRASI-DKGADVVAINDPSLVLTTXGLPFPV*FDS 215
GFGRIGRLV R ++ + ++VA+NDP +TT + + +D+
Sbjct: 15 GFGRIGRLVARVALQSEDVELVAVNDP--FITTEYMTYMFKYDT 56
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 135 bits (326), Expect = 3e-32
Identities = 65/138 (47%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Frame = +1
Query: 190 YLFQYDSTHGRFKGTVRPNGH--LVVNGKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFT 363
+L +YDST G F V+P G + V+GK + P +PWG+ G + V+E TGVF
Sbjct: 110 HLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFV 169
Query: 364 TTDKASAHLVGGAKKVIISAPS-ADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAK 540
D A H+ GAKKV+I+AP D P +VVGVN + Y P +ISNASCTTNCLAP K
Sbjct: 170 DRDGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYSPDEPIISNASCTTNCLAPFVK 229
Query: 541 VIHDNFELIEGLMTTVHA 594
++ F +I+G MTT H+
Sbjct: 230 ILDQKFGIIKGTMTTTHS 247
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +3
Query: 72 KIGINGFGRIGRLVLRASIDKG----ADVVAIND 161
K+ INGFGRIGR LR +G DV+AIND
Sbjct: 68 KVAINGFGRIGRNFLRCWHGRGDSSPLDVIAIND 101
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 116 bits (280), Expect = 1e-26
Identities = 60/140 (42%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Frame = +1
Query: 190 YLFQYDSTHGRFKGTVR--PNGHLVVNGKKTVSLRGIXPCXIPWGQAGAEYVVESTGVFT 363
+L +YDS G FK V+ + + V+GK + P +PW + G + V+E TGVF
Sbjct: 120 HLLKYDSMLGTFKADVKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFV 179
Query: 364 TTDKASAHLVGGAKKVIISAPS--ADAPMFVVGVNLEAYDPSY-KVISNASCTTNCLAPL 534
A H+ GAKKVII+AP+ AD P +V+GVN Y +ISNASCTTNCLAP
Sbjct: 180 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVLGVNEGDYSHEVANIISNASCTTNCLAPF 239
Query: 535 AKVIHDNFELIEGLMTTVHA 594
K++ + F +++G MTT H+
Sbjct: 240 VKILDEEFGIVKGTMTTTHS 259
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 72 KIGINGFGRIGRLVLRASIDK---GADVVAIND 161
K+ INGFGRIGR LR ++ +VV +ND
Sbjct: 79 KVAINGFGRIGRNFLRCWHERENSPLEVVVVND 111
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 470 ASRLTPTTNMGASALGAEMITFLAPPTK*AEALSVVVNTPV 348
+ L TT G + +GA + F++ P+K SVVVN V
Sbjct: 327 SEELIDTTGAGDAFIGAVLYAFVSGPSKFCSVKSVVVNLAV 367
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 39 LRKYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAIND-PSLVLTTXGLPFPV*FDS 215
L ++ +I S I GFG +G R +KG V+A+ D + GL P
Sbjct: 197 LAEHGKSISGSTFVIQGFGNVGSWAARIIHEKGGKVIALGDVTGSIRNKNGLDIPALMKH 256
Query: 216 RSFQG 230
R+ G
Sbjct: 257 RNEGG 261
>12_01_0990 + 10052430-10052895,10053633-10054219
Length = 350
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 120 ASIDKGADVVAINDPSLVLTTXGLPFPV*FDSRSFQGY 233
ASI DV A ++PSL+ G P V D+ FQ Y
Sbjct: 241 ASIRGYEDVPANDEPSLMKAVAGQPVSVAVDASKFQFY 278
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -1
Query: 370 QWL*THRLIQQRIQHQPDPMEXSMXGSLSETQFSFRLRRGVHSASRYP*NDRESNHTGKG 191
+WL RL+Q IQ D + + + +E Q + +LRR + + N ES++T
Sbjct: 332 RWLEERRLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRN--ESSNTSAS 389
Query: 190 RPXVVKTNEGSLIATTSAP----LSIEARSTRRP 101
+ + + ++S P +S + RRP
Sbjct: 390 NKDNATSKQATPKRSSSQPRRPIISADGADKRRP 423
>07_03_1666 + 28482262-28482385,28482475-28482992
Length = 213
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 461 LTPTTNMGASALGAEMITFLAPPTK*AEALSVVVNTPVDSTTYSAPA*PHG 309
+T + MG+ G+ + + PP + S+ TT AP PHG
Sbjct: 81 VTSSEMMGSLMSGSGRVAVITPPPAASGGASLPAAAAAGGTTLVAPVVPHG 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,236,026
Number of Sequences: 37544
Number of extensions: 369435
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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