Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C15
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.32 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 292 SLSETQFSFRLRRGVHSASRYP*NDRESNHTGKGRPXVVKTNEGSLIATTSAPLS 128
           S+  T+F    +R +   +R   N   ++  G+ R  VV+   GS+I    +P S
Sbjct: 326 SIFNTEFREAFKRILTKGARARGNQPSTSECGEFRSVVVQKRNGSMIECNISPRS 380


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 223 NDRESNHTGKGRPXVVKTN 167
           N++   H GKG P VVKTN
Sbjct: 50  NNQLPTH-GKGTPTVVKTN 67


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 468 FQVDTNY--KHGSISTWCGDDYFLGSTHQVSRSFISGCEHTG*FNNVFSTSL 319
           FQV+ ++  K     +W GD + +    +VSR+  +G   T     V S S+
Sbjct: 691 FQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSI 742


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 85  LIPIFDMIMVRVYFRNEVTQRSLSTSL 5
           L P+++ +M  +YF +EV Q++ + ++
Sbjct: 157 LPPMYE-VMPHLYFNDEVMQKAYNIAM 182


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 85  LIPIFDMIMVRVYFRNEVTQRSLSTSL 5
           L P+++ +M  +YF +EV Q++ + ++
Sbjct: 157 LPPMYE-VMPHLYFNDEVMQKAYNIAM 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,401
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)