Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C13
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   3.6  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   4.8  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   6.3  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   8.4  

>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = -3

Query: 359 ILTMFNHKPRYTRVSVNAIFSERIPRVKRGYYCTLKTYCI*FCVSFYVLYFDYCAQAM 186
           I+ +FN +PR+      A   + +  ++   +C L       C+ + +LY  +C  ++
Sbjct: 96  IMKIFNLQPRFCSFYDPAFLKDDVEFLENKGFCVLPDPPTPSCLKYTLLYMPHCPTSL 153


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 182 YAWLVHSNQNITRKMTHRIKYNKFSVYSNTPA 277
           Y +L+HS+ NI +     I  +  SV SN PA
Sbjct: 409 YPYLIHSDGNIIQIDCQIISVSPHSVKSNEPA 440


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 MIKHSQNLIQKNNKSF*SITLILRTLYAI 425
           +I+H+ NL+Q NN S   +  +  TLY I
Sbjct: 607 LIQHTNNLLQSNNASL--LRRLAATLYRI 633


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 393 ITLILRTLYAIHTLIFYGKIHLLSL 467
           + L+L TL+ I+T  FY  + L  L
Sbjct: 296 LVLVLLTLFCIYTAAFYRSVRLARL 320


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 368 KKQQIILINHFNSKNTLCNTYSYFLRKNTSIVFTLRLYAL 487
           ++  +  I++F++ N    +  YF +   S++F  R Y+L
Sbjct: 53  EQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,741
Number of Sequences: 5004
Number of extensions: 38626
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)