Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C13
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109     29   2.1  
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412     27   6.3  
11_06_0074 - 19821699-19823702                                         27   8.4  

>06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109
          Length = 353

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 276 LYARDTFRKNRVN*NSRISGFMIK--HSQNLIQKNNK 380
           L ARD  RKN+    S+  G ++K  H+ + ++KN K
Sbjct: 106 LLARDQMRKNKEGETSQAEGLLVKEDHAGHKVKKNKK 142


>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
          Length = 255

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 276 LYARDTFRKNRVN*NSRISGFMIK--HSQNLIQKNNK 380
           L ARD  RKN+    S+  G ++K  H    ++KN K
Sbjct: 53  LLARDQLRKNKEGETSQAEGLLVKEDHVGRKVKKNKK 89


>11_06_0074 - 19821699-19823702
          Length = 667

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 365 TKKQQIILIN---HFNSKNTLCNTYSYFLRKNTSIVFTLRLYALF 490
           TKK   ++ N   H   K+T CN Y   L  NT +   ++ Y++F
Sbjct: 370 TKKDISVITNNSSHLLGKSTFCNVYKGILDDNTLV--AVKTYSVF 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,821
Number of Sequences: 37544
Number of extensions: 190032
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)