Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C13
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    29   1.4  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    29   1.4  
AF000261-9|AAB52923.3|  200|Caenorhabditis elegans Hypothetical ...    28   3.3  

>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 377  QIILINHFNSKNTLCNTYSYFLRKNTSIVFTLRLYALF 490
            +++L++   S   L NT+ YFL KN + VF +  Y  +
Sbjct: 978  RLLLVHGHWSYYRLANTFLYFLYKNANAVFIIFYYQFY 1015


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 377  QIILINHFNSKNTLCNTYSYFLRKNTSIVFTLRLYALF 490
            +++L++   S   L NT+ YFL KN + VF +  Y  +
Sbjct: 978  RLLLVHGHWSYYRLANTFLYFLYKNANAVFIIFYYQFY 1015


>AF000261-9|AAB52923.3|  200|Caenorhabditis elegans Hypothetical
           protein F19B10.2 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +2

Query: 131 ILWQHRIHSLTCVLCI*YAWLVHSNQNITRKMTHRIKYNKFSVYSNT-----PALREGYV 295
           + W   +  L    C     ++ +N+ +  ++   ++   F + +N+     PAL +GY+
Sbjct: 128 VTWSTLVQKLMSEACQRETKMLEANEKLKAELAE-LRNQMFELEANSENLKRPALSDGYL 186

Query: 296 PKKSR*LKLAYIGV 337
            KKS  L L+ +G+
Sbjct: 187 AKKSARLYLSSVGL 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,208
Number of Sequences: 27780
Number of extensions: 210252
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)