Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C12
         (595 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156; Eukar...    42   0.011
UniRef50_A0DKK6 Cluster: Chromosome undetermined scaffold_54, wh...    33   3.8  
UniRef50_Q028H0 Cluster: Putative uncharacterized protein precur...    33   5.0  
UniRef50_A0DI11 Cluster: Chromosome undetermined scaffold_51, wh...    33   6.7  
UniRef50_A3LSD7 Cluster: Bud-emergence protein; n=2; Saccharomyc...    33   6.7  
UniRef50_A0BWI8 Cluster: Chromosome undetermined scaffold_132, w...    32   8.8  
UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25; Euka...    32   8.8  

>UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156;
           Eukaryota|Rep: 60S ribosomal protein L11 - Homo sapiens
           (Human)
          Length = 178

 Score = 41.9 bits (94), Expect = 0.011
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 530 KNVMRNLHIRKLCLNICVGESG 595
           +N MR L IRKLCLNICVGESG
Sbjct: 9   ENPMRELRIRKLCLNICVGESG 30


>UniRef50_A0DKK6 Cluster: Chromosome undetermined scaffold_54, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_54,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2131

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 317 CRLNMT*SSCNNLSYACNSFILL*YHITTKNKLCFYYEKKNLVPNSARG 463
           C ++ + +SC ++   CN +++  + I +K  LC Y+  K +  NS  G
Sbjct: 828 CSIHASLNSCIDIQNDCNQYLIEEHCIQSKTSLCHYFNNKCVNRNSIYG 876


>UniRef50_Q028H0 Cluster: Putative uncharacterized protein
           precursor; n=1; Solibacter usitatus Ellin6076|Rep:
           Putative uncharacterized protein precursor - Solibacter
           usitatus (strain Ellin6076)
          Length = 1230

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 139 DSVSNAPTTHK*ELEGPQSLFAYKLPSKLTLR-GFRLDNAETNSHLY 276
           + V+N P T K +  GP+  FAY+L  KL +R GF L  ++ N+ ++
Sbjct: 732 NGVANTPATLKKKNFGPRFGFAYQLGEKLVMRGGFALYFSDPNNDIF 778


>UniRef50_A0DI11 Cluster: Chromosome undetermined scaffold_51, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_51,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 197

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 530 KNVMRNLHIRKLCLNICVGESG 595
           +NVMR + I KL ++IC GESG
Sbjct: 36  ENVMRKIRIEKLMVHICAGESG 57


>UniRef50_A3LSD7 Cluster: Bud-emergence protein; n=2;
           Saccharomycetaceae|Rep: Bud-emergence protein - Pichia
           stipitis (Yeast)
          Length = 1747

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 175 ELEGPQSLFAYKLPSKLTLRGFRLDNAETNSHLYNFLSFY 294
           EL+G   L+ YK P  L ++ F+LDN+ + S+  N  SFY
Sbjct: 44  ELKGSH-LYLYKPPLSLNIKNFKLDNSGSTSNDPNDESFY 82


>UniRef50_A0BWI8 Cluster: Chromosome undetermined scaffold_132,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_132,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 529

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 136 DDSVSNAPTTHK*ELEGPQSLFAYKLPSKLTLRGFRLDNAETNSHLYNFLSFYC 297
           DDS ++APT  K ++E P   F   +  + +++G   D  E +  L  ++SF C
Sbjct: 223 DDSATHAPTHRKQDMETPDLNFGSPMMEQDSIKGDESDE-EQHKALPQYISFQC 275


>UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25;
           Eukaryota|Rep: 60S ribosomal protein L11-A -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 174

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +2

Query: 527 SKNVMRNLHIRKLCLNICVGESG 595
           ++N MR+L I KL LNI VGESG
Sbjct: 5   AQNPMRDLKIEKLVLNISVGESG 27


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,304,535
Number of Sequences: 1657284
Number of extensions: 8625941
Number of successful extensions: 19125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19123
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)