Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C12
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    29   0.39 
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    29   0.39 
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   1.6  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   4.8  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.3  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   6.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   8.3  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 527 SKNVMRNLHIRKLCLNICVGESG 595
           ++N M+ L I KL LNI +GESG
Sbjct: 5   AQNPMKELRISKLVLNISLGESG 27


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 527 SKNVMRNLHIRKLCLNICVGESG 595
           ++N M+ L I KL LNI +GESG
Sbjct: 5   AQNPMKELRISKLVLNISLGESG 27


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 110 PTVSHVYCPTTLFQMRRLHISESSRDRNHSSLTSYQVNSL 229
           P VS    P +++    LH+ E+ R R    + S ++NS+
Sbjct: 350 PQVSIANIPPSVYASCPLHVQEAIRKRQEQEIRSIRLNSM 389


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 ILEDNCRLNMT*SSCNNLSYACNSFILL*YHITTKN 409
           +L + C+L +    CN  SY C  +I + Y    KN
Sbjct: 178 LLSERCKLLLQSELCNQDSYDCPGYICV-YRFEQKN 212


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 9   AIRSQSANEGHDDVSTPR 62
           +I+S S+N+GH D+  P+
Sbjct: 158 SIKSNSSNQGHGDIPIPK 175


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 517 RSLLLLVIFFQCRRWYS 467
           RS+L +++FF C+ W++
Sbjct: 3   RSVLTIILFFSCQFWHA 19


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 323  VDSCLPKYIQ*KLRKLYK*ELVSALSSLK 237
            +DS  P+Y + +L  + K ELVS +S LK
Sbjct: 1091 MDSTFPEYSEDELSSVDKSELVSNISVLK 1119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,026
Number of Sequences: 5004
Number of extensions: 40369
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)