Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C12
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048...    30   1.2  
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656...    30   1.2  
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767...    30   1.2  
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576...    30   1.2  
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523     28   4.9  
03_06_0078 + 31505126-31507933                                         27   8.5  

>06_03_0409 -
           20503480-20503678,20504522-20504717,20504805-20504847,
           20505632-20505739,20505848-20505850
          Length = 182

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 533 NVMRNLHIRKLCLNICVGESG 595
           N MR + ++KL LNI VGESG
Sbjct: 9   NPMREIKVQKLVLNISVGESG 29


>05_02_0095 +
           6564703-6564705,6564848-6564955,6565153-6565195,
           6565303-6565409,6566310-6566395,6566396-6566594
          Length = 181

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 533 NVMRNLHIRKLCLNICVGESG 595
           N MR + ++KL LNI VGESG
Sbjct: 9   NPMREIKVQKLVLNISVGESG 29


>02_02_0195 +
           7676014-7676094,7676111-7676218,7676307-7676349,
           7676449-7676648
          Length = 143

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 533 NVMRNLHIRKLCLNICVGESG 595
           N MR + ++KL LNI VGESG
Sbjct: 35  NPMREIKVQKLVLNISVGESG 55


>01_01_0745 +
           5769150-5769152,5769268-5769375,5769812-5769854,
           5769945-5770140,5770836-5771034
          Length = 182

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 533 NVMRNLHIRKLCLNICVGESG 595
           N MR + ++KL LNI VGESG
Sbjct: 9   NPMREIKVQKLVLNISVGESG 29


>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
          Length = 973

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +2

Query: 197 SSLTSYQVNSLLEVLDWIMPKPTLIYIISSVFTVYILEDNCRLNMT*SSCNNLSYACNSF 376
           S+  S   +  L++L +++P      I++SVF   +L+   +      + +++    N+ 
Sbjct: 594 SACASNSRSGKLQILKYVLPSIVTFIIVASVFLYLMLKGKFKTRKELPAPSSVIGGINNH 653

Query: 377 ILL*YH 394
           IL+ YH
Sbjct: 654 ILVSYH 659


>03_06_0078 + 31505126-31507933
          Length = 935

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 92  LHCVHIPTVSHVYCPTTLFQMRRLHISESSRDRNHSSLTSYQVNSLLEVLDWIMPKP 262
           LH  H+P  S  Y    + ++    + + S DR+ +S T Y+ N  + V + +M  P
Sbjct: 441 LHATHLPAFSGAYSSAQVREVIEDEMDQDSSDRDGAS-TIYEENESVSVGE-VMKSP 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,980
Number of Sequences: 37544
Number of extensions: 230297
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)