Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C12
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    43   1e-04
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...    43   2e-04
AF016670-1|AAB66108.2|  512|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +2

Query: 527 SKNVMRNLHIRKLCLNICVGESG 595
           ++NVMR L I+KLCLNICVGESG
Sbjct: 15  ARNVMRELKIQKLCLNICVGESG 37


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +2

Query: 530 KNVMRNLHIRKLCLNICVGESG 595
           +NVMR L I+KLCLNICVGESG
Sbjct: 16  RNVMRELKIQKLCLNICVGESG 37


>AF016670-1|AAB66108.2|  512|Caenorhabditis elegans Hypothetical
           protein K02F6.7 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 173 ESSRDRNHSSLTSYQVNSLLEVLDWIMPKPTLIYI 277
           E+   + +   TS    S+L V +WIMP+  +IY+
Sbjct: 27  EAQAGQKYEHFTSPYKQSMLTVKEWIMPQGLVIYV 61


>Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC455.3 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 241 RLDNAETNSHLYNFLSFYCI 300
           ++DN E  ++ YNF+ FYC+
Sbjct: 470 QVDNLEPYANKYNFIEFYCL 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,761,424
Number of Sequences: 27780
Number of extensions: 220865
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)