Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C12
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.98 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 62  RGS*LGIDSRLHCVHIPTVSHVYCPTTLFQMRRLHISESSRDRNHSSLTSYQVNSLLEVL 241
           RGS +G  +      IP    +Y P T   + R  ++ +S  +N  S   Y+ NS+  V+
Sbjct: 653 RGSKIGSPTPAESTFIPEERRIYSPITFQDVARRSVA-NSPTKNADS-REYRSNSMGAVM 710


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 399 LRKINYVSIMKKKTSCRIRHEGREY 473
           +R +   +I+KK+T   IRH+   Y
Sbjct: 3   IRPVYRPTIVKKRTKKFIRHQSDRY 27


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +3

Query: 354 CHTLVTVLYYYNII*LRKINYVSIMKKK 437
           C  ++ ++YYY+ I    +N+   ++++
Sbjct: 221 CIPMILIIYYYSQIVSHVVNHEKALREQ 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,400
Number of Sequences: 438
Number of extensions: 2684
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)