Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C11
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 278 2e-75
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 275 2e-74
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 274 3e-74
01_05_0710 + 24492337-24493053 30 1.4
03_05_0145 + 21254448-21255488 29 1.8
01_01_1101 + 8731427-8732938 29 1.8
01_05_0674 - 24187820-24188713,24188809-24189204 29 2.4
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 29 3.1
10_08_0510 + 18430580-18431781,18433176-18433554 29 3.1
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 3.1
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 3.1
12_01_0843 + 7891622-7892524 28 5.5
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 5.5
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 28 5.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.5
04_04_0950 + 29609484-29611025 27 7.2
12_01_0337 - 2591689-2593839 27 9.6
10_01_0099 - 1202668-1203023,1203097-1206037 27 9.6
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 27 9.6
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 27 9.6
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 9.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 9.6
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 278 bits (682), Expect = 2e-75
Identities = 123/178 (69%), Positives = 148/178 (83%)
Frame = +3
Query: 6 RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCK
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCK 141
Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 539
VR V G K +P+L T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD GN+ M+
Sbjct: 142 VRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMV 199
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 275 bits (674), Expect = 2e-74
Identities = 120/178 (67%), Positives = 148/178 (83%)
Frame = +3
Query: 6 RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 539
VR V G K +PYL T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD GN+ M+
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMV 183
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 274 bits (672), Expect = 3e-74
Identities = 119/178 (66%), Positives = 148/178 (83%)
Frame = +3
Query: 6 RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 539
VR V G K +PYL T+DGRT+RYPDP+IK ND++++D+ TNKI+DFIKFD GN+ M+
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMV 183
>01_05_0710 + 24492337-24493053
Length = 238
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -1
Query: 532 QRLPESNLMKSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 353
+RLP S L L M + T +F L++ + +RPS + LLG + +RR
Sbjct: 82 ERLPFSPLAAH---LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE- 137
Query: 352 YLASSGVIRWI 320
++ V+RW+
Sbjct: 138 ---AASVVRWL 145
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 362 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 484
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 176 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 42
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 368 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 496
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 446 AHQGERLGAARHLHQQDHGLHQVR--LRQPLH 535
A QGE GAAR +HQ+ G R +RQ LH
Sbjct: 399 AAQGELAGAARQVHQRRRGRRGQRGHVRQELH 430
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 499 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 350
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 499 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 350
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 359 VQGAARRDRPQERAVPGDARRAHAPVPG 442
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 341 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGE 460
R V G R +P++ A AHAP P P+ G+
Sbjct: 37 RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPSVAGK 76
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 356 AVQGAARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 475
A +G R+ R P DA A HAP P P +G + GAA
Sbjct: 98 APRGRGRKSRRGRPEPPSDAGAAPHAP-PSPPRRGAKKGAA 137
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +2
Query: 344 SQVQAVQGAARRDRPQERAVPGDARRA---HAPVPGPAHQGERLGAARHLHQQDHG 502
++ A G A R RP P A A H P P + +R RH H HG
Sbjct: 53 TETPAADGDAARKRPSAGDAPAPAPLADKRHRPNPPSSGSRDRDRHHRHGHSHSHG 108
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 285 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 389
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 190 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 62
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 421 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 293
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 426 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 539
T R PD + ++ LD+S N + I GNL MI
Sbjct: 123 TGRMPDEISELQRLTMLDLSYNNLTGHIPASVGNLTMI 160
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 435 YPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 530
YP+ + +ND L++S N +D++ GNL
Sbjct: 659 YPETISTLNDLEYLNLSRNSRIDYLPRSLGNL 690
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 3 TRKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLR 107
TRK K NA +AW+ DK+ G + S G L+
Sbjct: 30 TRKSEKVKNAKRAWVCDKVMGWLSEDASVGAKDLQ 64
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 208 TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 366
+GK L R +RDL L RK S ++ + K L + K + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1
Query: 100 LWGPVEGRGAYTPPSLSNIHALGAFKR 20
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,135
Number of Sequences: 37544
Number of extensions: 338213
Number of successful extensions: 1279
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -