Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C09
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 71 5e-14
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 3.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 3.0
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 3.9
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 24 6.9
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 24 6.9
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 24 6.9
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 24 6.9
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 24 9.1
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 24 9.1
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 71.3 bits (167), Expect = 5e-14
Identities = 30/52 (57%), Positives = 44/52 (84%), Gaps = 2/52 (3%)
Frame = +3
Query: 45 ARDVV--QKKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEV 194
+RDV ++K RK HF APS +RRVLMSAPLSKELR+++ ++S+P+R+DD++
Sbjct: 4 SRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQI 55
Score = 68.5 bits (160), Expect = 3e-13
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +1
Query: 226 GKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 378
GK+ VYRKKF++ IER+ REKANGAS VGI SK VI KL ++KDRK +
Sbjct: 67 GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDL 117
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 62 EEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQRE 163
E ++EE + HP+ TY TT K + +RE
Sbjct: 972 ERREEEERENDEDHPSRTYKRTTKSITKRQQRRE 1005
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 321 DTDVHTGSIGFLTLDPFDVDYKLLTV 244
DT ++ SIG LT P +++ KLLT+
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLTL 1076
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 3.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 278 ILSM*TTNFLRYTCTTLPTCCLISL-VQLHFVVFAD 174
+L + T F+ +T+PTC L S+ V L +FAD
Sbjct: 412 VLILLATFFIMPVFSTVPTCMLASMVVSLGVSLFAD 447
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 24.2 bits (50), Expect = 6.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 332 FEGWIPTYTLAPLAFSRWILS 270
F W+P Y+ + + F W+L+
Sbjct: 123 FLSWVPFYSTSKIVFWLWLLN 143
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 110 STYVSTTLQRVKTKVQREIYANPQ 181
S VS L +KT++Q + + NPQ
Sbjct: 225 SLIVSAPLDVIKTRIQNKNFDNPQ 248
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 92 PFSHPTSTYVSTTLQRV 142
P HPT+ YVS L+R+
Sbjct: 126 PSYHPTTLYVSRVLKRI 142
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 220 AAL*VSYNCTSSSLRIGIDFTLNFCLN 140
A L +SY+ S SL I + TLNF L+
Sbjct: 454 AELVLSYDLMSKSLFISVVSTLNFSLS 480
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 82 CLFLFFFWTTSRAYCTSF 29
C F F WTT + Y SF
Sbjct: 556 CFFRTFIWTTYKLYPFSF 573
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 113 YSSDVRRGTEMPLPVFLLDDVTSLLYFILS 24
++ D+R + P P L D ++S LY + S
Sbjct: 173 FAPDLRLAPQFPFPCSLHDVLSSYLYLLKS 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,086
Number of Sequences: 5004
Number of extensions: 32979
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -