Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C09
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0323 - 2459854-2460306 80 7e-16
01_01_0263 + 2136858-2137331 80 7e-16
11_01_0317 - 2365493-2365786,2365825-2365953 79 9e-16
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 27 4.9
11_05_0027 - 18466042-18466431,18466669-18466739,18467105-18467351 27 6.5
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961 27 6.5
07_03_0761 - 21314806-21315144,21315267-21315417,21315509-213157... 27 6.5
05_07_0154 - 28059097-28060641 27 6.5
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 6.5
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 26 8.6
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708... 26 8.6
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 26 8.6
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576... 26 8.6
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 26 8.6
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 26 8.6
>12_01_0323 - 2459854-2460306
Length = 150
Score = 79.8 bits (188), Expect = 7e-16
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Frame = +1
Query: 31 MKYNKLVTSSRRKTGRG-ISVPLLTSDEYLCQHHSPKS*DKSST*NLCQSAKTTKCSCTR 207
MK N VTSSRRK + + P + S + K + ++ K + R
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSI-PIRKDDEVQVVR 59
Query: 208 -LIRQQVGKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 378
+ + GKVVQVYR+++V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK I
Sbjct: 60 GSYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 117
Score = 74.5 bits (175), Expect = 2e-14
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = +3
Query: 60 QKKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQLYE-TYKAAGGQ 230
++K RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQ+ +YK G+
Sbjct: 11 RRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGREGK 68
>01_01_0263 + 2136858-2137331
Length = 157
Score = 79.8 bits (188), Expect = 7e-16
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Frame = +1
Query: 31 MKYNKLVTSSRRKTGRG-ISVPLLTSDEYLCQHHSPKS*DKSST*NLCQSAKTTKCSCTR 207
MK N VTSSRRK + + P + S + K + ++ K + R
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSI-PIRKDDEVQVVR 59
Query: 208 -LIRQQVGKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 378
+ + GKVVQVYR+++V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK I
Sbjct: 60 GSYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 117
Score = 74.9 bits (176), Expect = 2e-14
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = +3
Query: 60 QKKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQLYE-TYKAAGGQ 230
++K RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQ+ +YK G+
Sbjct: 11 RRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGSYKGREGK 68
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 79.4 bits (187), Expect = 9e-16
Identities = 34/51 (66%), Positives = 45/51 (88%)
Frame = +1
Query: 226 GKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 378
GKVVQVYR+++V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK I
Sbjct: 54 GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 104
Score = 51.2 bits (117), Expect = 3e-07
Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Frame = +3
Query: 60 QKKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNV--KSMPIRKDDEVQLY 203
++K RK HF+APS +RRVLMSA LS ELR K+NV S R+ VQ+Y
Sbjct: 11 RRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 129 LSKELRQKFNVKSMPIRKDDEVQLYETYKAAGGQSSTGV 245
++ E R+K V +PIRKD+ +ET + GG SS+ +
Sbjct: 408 VAAEARKKSKVL-LPIRKDEYAVGHETDSSYGGTSSSRI 445
>11_05_0027 - 18466042-18466431,18466669-18466739,18467105-18467351
Length = 235
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 19 RNDRMKYNKLVTSSRRKTGRGISVPLLTSDEYLCQHHS 132
R + + +V SSRR GRG L +D C H +
Sbjct: 84 RFSKRHHKAIVESSRRVPGRGYKKYLAPADATRCSHRA 121
>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
Length = 221
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 72 RKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQLYETYKAAGG 227
R R S + +R +L S Q+F+V +M + DE+Q +E A G
Sbjct: 143 RNRTLSVSAEVRLMLQLWMNSFVCSQRFSVIAMKKQLQDEIQQHEEAHAGAG 194
>07_03_0761 -
21314806-21315144,21315267-21315417,21315509-21315746,
21315873-21316083,21316585-21316715,21317112-21317249,
21320183-21321071
Length = 698
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 101 VRRGTEMPLPVFLLDDVTSLLYFILSFLHLNPR 3
+RRG +PL + L ++ ++ + FLH PR
Sbjct: 10 MRRGQHLPLSLSLCYNLAAVALLVAVFLHAPPR 42
>05_07_0154 - 28059097-28060641
Length = 514
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 261 SLHRKDPA*ESQWSQCVRRYP 323
+L +P+ ES W C+ RYP
Sbjct: 479 ALRNVNPSPESPWEDCIDRYP 499
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 15 VKKRQNEVQ*ARDVVQKKNRKRHFSAPSHIRRVLMSAP 128
+KK+ Q ++ + +KK RK H S + + S+P
Sbjct: 653 IKKKLEREQRSKQIKKKKTRKMHAKTDSEVTSLAPSSP 690
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 68 KQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANP 178
K + F+CPF T T T LQ + + IYA P
Sbjct: 337 KHHDIFKCPFDKSTQT---TLLQFAEKNRKNLIYAGP 370
>07_03_1647 +
28370226-28370369,28370452-28370611,28370704-28370831,
28372512-28372628,28372729-28372782,28372985-28373075,
28373517-28373688,28374452-28374573,28374726-28374817,
28375331-28375373,28375596-28375656,28376367-28376515,
28376659-28376729,28376805-28376975,28377056-28377124,
28377427-28377528,28377629-28377697,28378060-28378138,
28378238-28378337,28378438-28378513,28378715-28378894,
28379430-28379552,28379634-28379717,28380068-28380252,
28380339-28380477,28380585-28380644,28380926-28381030,
28381332-28381445
Length = 1019
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 78 RHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQLYETYKAAGGQSS 236
+H S S +RVL+S P E+ Q+ VK++ ++ + + A GQSS
Sbjct: 314 KHIS--SLCQRVLLSGPAGSEIYQESLVKALTKHFGAKLLIIDPSLLASGQSS 364
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 46 LVTSSRRKTGRGISVPLLTSDEYLCQHHSP 135
L SSRR TGR +VP +++ E +++ P
Sbjct: 158 LSPSSRRGTGRPSAVPRISASEVARRYYEP 187
>04_03_0822 -
20054832-20055179,20056794-20056847,20057561-20057657,
20057752-20057780
Length = 175
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 289 SHAGSFRCRL--QTSYGTPVLLCPPAAL*VSYNCTSSSLR 176
+HAGSF+CRL +S+G P P AA + SSS R
Sbjct: 132 THAGSFKCRLHRSSSHGHP-SSSPTAAAAPAAAVQSSSSR 170
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 328 KGGYRRTHWLHWLSHAGSFRCR 263
K GY W+ +++ AGS+ R
Sbjct: 416 KSGYNTVEWVRYITRAGSYEIR 437
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 377 IVLRSLFIFNFTITHFEGWIPTYTLAPLAF 288
I+L L +F +F W+P Y+ A LAF
Sbjct: 45 ILLAVLTVFERVGDNFVSWLPMYSEAKLAF 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,064
Number of Sequences: 37544
Number of extensions: 216916
Number of successful extensions: 593
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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