Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C09
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   4e-20
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            34   0.044
SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)                  29   1.3  
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)            28   2.2  
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)                    28   2.2  
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)               27   3.8  
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)                 27   5.1  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_6139| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4e-06)          27   6.7  
SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)          26   8.8  
SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            26   8.8  
SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.8  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 93.9 bits (223), Expect = 4e-20
 Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
 Frame = +1

Query: 31  MKYNKLVTSSRRKTGRG-ISVPLLTSDEYLCQHHSPKS*DKSST*NLCQSAKTTKCSCTR 207
           MK N  V+SSRRK+ +   S P     + +    S +   K +  ++    K  +   TR
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSI-PVRKDDEVQVTR 59

Query: 208 --LIRQQVGKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 378
                QQVGKV+QVYRKK+V++I+RIQREKANGA+V VGIHPSK  IVKLK++KDRK I
Sbjct: 60  GHFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKI 118


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 63  KKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQ--LYETYKAAGGQSS 236
           KK+ +R+F   +HI + + ++  SK+ ++    K    + DD      Y T  A GG+S 
Sbjct: 133 KKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDDSTTKFFYRTKSAKGGESM 192

Query: 237 TG 242
            G
Sbjct: 193 GG 194


>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
          Length = 241

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 242 TCTTLPTCCLISLVQLHFVVFADWHRFHVE-LLS*LFGEWC*HKYSS 105
           TCT     C + L  LHF+++ D   F    L   LFG W  H  S+
Sbjct: 88  TCTIFFAICWLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSA 134


>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 242 TCTTLPTCCLISLVQLHFVVFADWHRFHVE-LLS*LFGEWC*HKYSS 105
           TCT     C + L  LHF+++ D   F    L   LFG W  H  S+
Sbjct: 243 TCTIFFAICWLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSA 289


>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
          Length = 441

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 53  RRPEEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQRRRSAVVRD 208
           R P   Q+ A +CP     +T  + T   +KTK         Q+RR   + D
Sbjct: 155 RAPNTHQDVAGECPVHRSVNTANTRTKLAMKTKTNPSRTGYSQKRRPRTITD 206


>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
          Length = 647

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 53  RRPEEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQRRRSAVVRD 208
           R P   Q+ A +CP     +T  + T   +KTK         Q+RR   + D
Sbjct: 577 RAPNTHQDVAGECPVHRSVNTANTRTKLAMKTKTNPSRTGYSQKRRPRTITD 628


>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
          Length = 815

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 230 LPTCCLISLVQLHFVVFADWHRFHVELLS*LFGEWC 123
           L TC L  L Q+  + F DW  F   +L+  F + C
Sbjct: 289 LATCDLTELGQIMGMTFGDWQLFRAWILNARFPQEC 324


>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 230  LPTCCLISLVQLHFVVFADWHRFHVELLS*LFGEWC 123
            L TC L  L Q+  + F DW  F   +L+  F + C
Sbjct: 1043 LATCDLTELGQIMGMTFGDWQLFRAWILNARFPQEC 1078


>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
          Length = 603

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 IRRVLMSAPLS-KELRQKFNVKSMPIRKDDEVQLYET 209
           IRR L   P++ K+L QKF  K   +  +  VQL  T
Sbjct: 544 IRRYLARKPMTTKDLLQKFKTKRTGLTNEQTVQLIAT 580


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 251  LRYTCTTLPTCCLISLVQLHFVVFADWHRF--HVELL 147
            +R TC       L ++ QL F++F  W+ F  HVE++
Sbjct: 910  MRDTCQYTWIFALCNIFQLLFLLFDSWYHFVPHVEII 946


>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 209  SLVQLHFVVFADWHRFHVE 153
            +LV++ F+V + W RFH E
Sbjct: 1567 TLVEMRFMVISAWRRFHSE 1585


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 57  VQKKNRKR--HFSAPSHIRRVLMSAPLSKELRQKFNVKSMP--IRK 182
           +QK  RK   H   P HIR+    + + K +R+  N  + P  IRK
Sbjct: 7   IQKHTRKSKTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_6139| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4e-06)
          Length = 400

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 140 VKTKVQREIYANPQRRRSAVVRDL 211
           V+T + REI   PQRR + V ++L
Sbjct: 62  VRTLMDREIITRPQRRTALVAKEL 85


>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
          Length = 1402

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 15  VKKRQNEVQ*ARDVVQKKNRKRHFSAPSHIRRV 113
           + K  NEV+ AR ++Q+K ++ +  A   +RRV
Sbjct: 75  ITKLNNEVREARSLLQQKEQEFYQQAEQEMRRV 107


>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 15  VKKRQNEVQ*ARDVVQKKNRKRHFSAPSHIRRV 113
           + K  NEV+ AR ++Q+K ++ +  A   +RRV
Sbjct: 381 ITKLNNEVREARSLLQQKEQEFYQQAEQEMRRV 413


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 54   VVQKKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKD 185
            VV K   +RHF+A            +  E + K ++ S+P+ KD
Sbjct: 1326 VVDKHQIERHFTAADLAELYKFDPDVLDETKNKEDIPSLPLPKD 1369


>SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 369 TVFIHL*LHNHTL*RVDTDVHTGSIGFLTLDPFDVDYKLLTVHLYYFAH 223
           TV +H   H H+  RV         G +T+      Y  +TVH  +  H
Sbjct: 591 TVTVHAVWHGHSSTRVIAQSQYTRYGTVTVHASYTQYSTVTVHAVWHGH 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,209
Number of Sequences: 59808
Number of extensions: 257390
Number of successful extensions: 653
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)