Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C09
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical pr... 75 1e-14
Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical p... 64 3e-11
Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical pr... 64 3e-11
AL132862-17|CAB60551.1| 266|Caenorhabditis elegans Hypothetical... 29 0.83
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 27 3.4
U64857-17|AAC25865.1| 161|Caenorhabditis elegans Hypothetical p... 27 3.4
Z92817-3|CAJ43914.1| 511|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z92817-2|CAJ43913.1| 510|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 27 4.5
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 27 4.5
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 27 4.5
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 27 4.5
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 27 4.5
AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid tr... 27 4.5
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 27 4.5
U41273-4|AAA82456.1| 257|Caenorhabditis elegans Hypothetical pr... 27 5.9
U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 26 7.8
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 26 7.8
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 26 7.8
>Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical
protein F28C6.7a protein.
Length = 142
Score = 75.4 bits (177), Expect = 1e-14
Identities = 30/51 (58%), Positives = 45/51 (88%)
Frame = +1
Query: 226 GKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 378
G+V++ YRKKFV++I++I REKANG++V++GIHPSK I KLK++KDR+ +
Sbjct: 67 GRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRAL 117
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3
Query: 66 KNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEV 194
K+RK HF+APSH RR +MSAPL+KELR K ++++PIR DDEV
Sbjct: 13 KSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEV 55
>Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical
protein F28C6.7c protein.
Length = 109
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3
Query: 66 KNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEV 194
K+RK HF+APSH RR +MSAPL+KELR K ++++PIR DDEV
Sbjct: 13 KSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEV 55
Score = 59.3 bits (137), Expect = 9e-10
Identities = 23/36 (63%), Positives = 34/36 (94%)
Frame = +1
Query: 226 GKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSK 333
G+V++ YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 67 GRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102
>Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical
protein F28C6.7b protein.
Length = 106
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3
Query: 66 KNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEV 194
K+RK HF+APSH RR +MSAPL+KELR K ++++PIR DDEV
Sbjct: 13 KSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEV 55
Score = 59.3 bits (137), Expect = 9e-10
Identities = 23/36 (63%), Positives = 34/36 (94%)
Frame = +1
Query: 226 GKVVQVYRKKFVVYIERIQREKANGASVYVGIHPSK 333
G+V++ YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 67 GRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102
>AL132862-17|CAB60551.1| 266|Caenorhabditis elegans Hypothetical
protein Y73F8A.23 protein.
Length = 266
Score = 29.5 bits (63), Expect = 0.83
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -2
Query: 239 CTTLPTCCLISLVQLHFVVFADWHRFHVELLS*LFGEWC*HKYSSDVRRGTEMPLPVFLL 60
C C LI+ + +F +F FHV + GE K ++++ + MP P+F
Sbjct: 56 CLDEEDCVLIAKITTNFYIFRQGKEFHVVQKTKESGEKVAFKKTNNMCK-VSMPKPLFGN 114
Query: 59 DDVTSL 42
D VT +
Sbjct: 115 DTVTEI 120
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 53 RRPEEKQEEAFQ---CPFSHPTSTYVSTTLQRVKTKVQREIYANPQ 181
RR +EK+EE + FSH + T + + QR +Y NPQ
Sbjct: 352 RRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQ 397
>U64857-17|AAC25865.1| 161|Caenorhabditis elegans Hypothetical
protein C37C3.11 protein.
Length = 161
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 65 EKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQRRRSAVVRDL 211
+KQ A+ C FS ST + LQ + + + +Y S +VR L
Sbjct: 9 QKQPSAYMCSFSLYASTVIMAVLQTILSALLAILYRVKIEGDSVIVRIL 57
>Z92817-3|CAJ43914.1| 511|Caenorhabditis elegans Hypothetical
protein W08G11.3b protein.
Length = 511
Score = 27.1 bits (57), Expect = 4.5
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 15 VKKRQNEVQ*ARDVVQKKNRKRHFSAPSHIRRVLMSAPLSKELRQ-----KFNVKSMPIR 179
++ RQ VQ A+ V+K A + I+R+L S++L K N++ IR
Sbjct: 216 MEARQKFVQGAQLNVKKAEADLQL-ANAEIQRLLRELDSSQQLENSSITDKRNIEEELIR 274
Query: 180 KDDEVQLYETYKAA 221
K+DE++L YK+A
Sbjct: 275 KEDEIRL-ANYKSA 287
>Z92817-2|CAJ43913.1| 510|Caenorhabditis elegans Hypothetical
protein W08G11.3a protein.
Length = 510
Score = 27.1 bits (57), Expect = 4.5
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 15 VKKRQNEVQ*ARDVVQKKNRKRHFSAPSHIRRVLMSAPLSKELRQ-----KFNVKSMPIR 179
++ RQ VQ A+ V+K A + I+R+L S++L K N++ IR
Sbjct: 215 MEARQKFVQGAQLNVKKAEADLQL-ANAEIQRLLRELDSSQQLENSSITDKRNIEEELIR 273
Query: 180 KDDEVQLYETYKAA 221
K+DE++L YK+A
Sbjct: 274 KEDEIRL-ANYKSA 286
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 321 DTDVHTGSIGFLTLDPFDVDYKLLTVHLYYFAHLLPY-KSRTTALRRLCGLA*ISR 157
DT GS T FDV H+ YF LPY KS ++ + + C ++ SR
Sbjct: 190 DTHACYGSDSLDTTLVFDVTTATTECHVDYFNPRLPYVKSGSSCIGQFCFISATSR 245
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 105 RRVLMSAPLSKELRQKFNVKSMP---IRKDDEVQLYETYK 215
RR+ L KEL QK N+++ P KD +Y YK
Sbjct: 738 RRIQTGIKLLKELAQKMNIRACPATYTEKDAFAMVYLRYK 777
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 105 RRVLMSAPLSKELRQKFNVKSMP---IRKDDEVQLYETYK 215
RR+ L KEL QK N+++ P KD +Y YK
Sbjct: 738 RRIQTGIKLLKELAQKMNIRARPATYTEKDAFAMVYLRYK 777
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 105 RRVLMSAPLSKELRQKFNVKSMP---IRKDDEVQLYETYK 215
RR+ L KEL QK N+++ P KD +Y YK
Sbjct: 738 RRIQTGIKLLKELAQKMNIRARPATYTEKDAFAMVYLRYK 777
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 163 NLCQSAKTTKCSCTRLIRQQVGKVVQVYRKK 255
N+C+ + TKC + R+ V K VY K+
Sbjct: 63 NMCKKCRYTKCILVGMKRESVQKFRDVYGKR 93
>AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid
transporter protein 3 protein.
Length = 493
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 101 VRRGTEMPLPVFLLDDVTSLLYFILS 24
V + T+ P+P +L + SLLY +LS
Sbjct: 349 VNKTTKTPIPAVILTGLLSLLYLLLS 374
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 163 NLCQSAKTTKCSCTRLIRQQVGKVVQVYRKK 255
N+C+ + TKC + R+ V K VY K+
Sbjct: 55 NMCKKCRYTKCILVGMKRESVQKFRDVYGKR 85
>U41273-4|AAA82456.1| 257|Caenorhabditis elegans Hypothetical
protein C26B9.2 protein.
Length = 257
Score = 26.6 bits (56), Expect = 5.9
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 84 FSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQLYETYKAAGGQSSTG 242
F IRR APL KE R K + P++ D VQL Y G++S G
Sbjct: 41 FQKDEEIRR----APLPKE-RNKVKNEHEPVKLADTVQLPGGYNPLPGRTSFG 88
>U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical
protein C35D10.6 protein.
Length = 287
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +3
Query: 51 DVVQKKNRKR-HFSAPSHI-----RRVLMSAPLSKELRQKFNVK 164
D+V+ N HF A S + R+ L PL KEL QK+NV+
Sbjct: 182 DLVKYCNENNIHFQAYSSLGSPTYRKQLSEEPLIKELAQKYNVE 225
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 183 DDEVQLYETYKAAGGQSSTGVP*EVCSLHRKDPA 284
D E+ YE +K + ++S+ V +C L KDPA
Sbjct: 189 DTEILRYEVHKDSSARTSSTVKPRIC-LPAKDPA 221
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 183 DDEVQLYETYKAAGGQSSTGVP*EVCSLHRKDPA 284
D E+ YE +K + ++S+ V +C L KDPA
Sbjct: 188 DTEILRYEVHKDSSARTSSTVKPRIC-LPAKDPA 220
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 183 DDEVQLYETYKAAGGQSSTGVP*EVCSLHRKDPA 284
D E+ YE +K + ++S+ V +C L KDPA
Sbjct: 186 DTEILRYEVHKDSSARTSSTVKPRIC-LPAKDPA 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,279,015
Number of Sequences: 27780
Number of extensions: 190643
Number of successful extensions: 600
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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