Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C08
         (417 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4GXR5 Cluster: Ribosomal protein SAe; n=2; Adephaga|Re...    35   0.78 
UniRef50_Q7SBQ3 Cluster: Predicted protein; n=4; Pezizomycotina|...    34   1.4  
UniRef50_A6W2X2 Cluster: Two component, sigma54 specific, transc...    33   2.4  
UniRef50_Q9ZC68 Cluster: N-succinylglutamate 5-semialdehyde dehy...    33   2.4  
UniRef50_A7Q244 Cluster: Chromosome chr13 scaffold_45, whole gen...    32   4.1  
UniRef50_UPI000049963A Cluster: AAA family ATPase; n=1; Entamoeb...    31   7.2  
UniRef50_Q8EEV7 Cluster: Putative uncharacterized protein; n=12;...    31   9.6  
UniRef50_Q8IJD7 Cluster: Putative uncharacterized protein; n=1; ...    31   9.6  

>UniRef50_Q4GXR5 Cluster: Ribosomal protein SAe; n=2; Adephaga|Rep:
           Ribosomal protein SAe - Meladema coriacea
          Length = 112

 Score = 34.7 bits (76), Expect = 0.78
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -1

Query: 417 RDQRWEVVVDLFFYRD 370
           R+ +WEVVVDLFFYRD
Sbjct: 20  RETKWEVVVDLFFYRD 35


>UniRef50_Q7SBQ3 Cluster: Predicted protein; n=4;
           Pezizomycotina|Rep: Predicted protein - Neurospora
           crassa
          Length = 564

 Score = 33.9 bits (74), Expect = 1.4
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 228 PVLNLQPMMQLVQHSQSIPHELAAELPLWERRQPVP*LVALPSHSLQGHDRRTSQRQ 398
           P  ++  M +  Q  Q +P+++ A+   W  RQP P + ALP H L  H ++  Q Q
Sbjct: 148 PPPSVASMKKQQQQQQRVPNDVHAQA--W--RQPTPSMPALPQHHLPPHQQQQQQLQ 200


>UniRef50_A6W2X2 Cluster: Two component, sigma54 specific,
           transcriptional regulator, Fis family; n=4;
           Proteobacteria|Rep: Two component, sigma54 specific,
           transcriptional regulator, Fis family - Marinomonas sp.
           MWYL1
          Length = 455

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +3

Query: 225 VPVLNLQPMMQLVQHSQSIPHELAAELPLWERRQPVP 335
           VPVL LQ  +Q +Q+ QSIP +L+ E   W R Q  P
Sbjct: 322 VPVL-LQSFLQRLQNQQSIPLQLSPEAMQWFREQAWP 357


>UniRef50_Q9ZC68 Cluster: N-succinylglutamate 5-semialdehyde
           dehydrogenase; n=180; Proteobacteria|Rep:
           N-succinylglutamate 5-semialdehyde dehydrogenase -
           Yersinia pestis
          Length = 505

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 216 EQRVPVLNLQPMMQLVQHSQSIPHELAAEL--PLWERRQPVP*LVALPSHSLQGHDRRTS 389
           EQR  V+  Q    L QH QS+   ++ E   P WE    V  ++   + SLQ +  RT 
Sbjct: 73  EQRATVIQ-QFAALLEQHKQSLARTISLETSKPYWETLTEVQAMIGKVAISLQAYQTRTG 131

Query: 390 QRQLP 404
             Q P
Sbjct: 132 HSQTP 136


>UniRef50_A7Q244 Cluster: Chromosome chr13 scaffold_45, whole genome
           shotgun sequence; n=42; core eudicotyledons|Rep:
           Chromosome chr13 scaffold_45, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 1436

 Score = 32.3 bits (70), Expect = 4.1
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 404 GKLSLT-CSSIVTLKRVRRKSNKLRNRLSSLP-KWKLRRQFMRNGLRMLNQLHH 249
           GKL ++   ++V ++ VR    KL++ L  L  +W       RNG+  +N LHH
Sbjct: 717 GKLRISKLENVVNIQDVRVARLKLKDNLERLTLEWSFDSDGSRNGMDQMNVLHH 770


>UniRef50_UPI000049963A Cluster: AAA family ATPase; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: AAA family ATPase - Entamoeba
           histolytica HM-1:IMSS
          Length = 712

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 413 TSVGKLSLTCSSIVTLKRVRRKSNKLRNRLSSLP 312
           TS+ +L+L+C S    ++V+R +NKLR  L + P
Sbjct: 84  TSITELTLSCLSDEQFEQVKRLTNKLRKELLNFP 117


>UniRef50_Q8EEV7 Cluster: Putative uncharacterized protein; n=12;
           Shewanella|Rep: Putative uncharacterized protein -
           Shewanella oneidensis
          Length = 206

 Score = 31.1 bits (67), Expect = 9.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 276 SIPHELAAELPLWERRQPVP*LVALPS 356
           S+PH   A L LW+  QP+P  +AL S
Sbjct: 10  SVPHPFTAYLSLWDENQPLPSEMALRS 36


>UniRef50_Q8IJD7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 603

 Score = 31.1 bits (67), Expect = 9.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 386 CSSIVTLKRVRRKSNKLRNRLSSLPKWKLRRQFMRNGL 273
           C S+  LK   +K NK +  +SSL KW +   F+  GL
Sbjct: 321 CESMEILKPSEKKKNKPQKTISSL-KWNINGNFLATGL 357


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,948,486
Number of Sequences: 1657284
Number of extensions: 4807955
Number of successful extensions: 11212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11209
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)