Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C08
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   0.88 
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    26   2.0  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   4.7  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   6.2  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    24   8.2  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    24   8.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 417 RDQRWEVVVDLFFYRD 370
           R   WEV+ DL+FYRD
Sbjct: 194 RTTAWEVMPDLYFYRD 209


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 417 RDQRWEVVVDLFFYRD 370
           R   W+V+ DL+FYRD
Sbjct: 193 RSAPWDVMPDLYFYRD 208


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 383 SSIVTLKRVRRKSNKLRNRLSSLPKWKL 300
           + I+  K+ +    ++RN LSSL  W+L
Sbjct: 180 AGIIAHKQTQETHERIRNWLSSLNSWQL 207


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 345 ALPSHSLQGHDRRTSQRQLPNAGH 416
           A+ SHS + H +RT+Q+      H
Sbjct: 546 AISSHSSESHSKRTTQQPKSTPNH 569


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 339 LVALPSHSLQGHDRRTSQRQL 401
           L+ LP HS +  ++ +SQR+L
Sbjct: 126 LLTLPDHSKETQEKTSSQREL 146


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 62  TKVYNVYAAVQSWAEPPHDXXXXXXXXXXVLHSS*T*LAQSSC 190
           T+ YNV   + +W   P+           +   S   L QSSC
Sbjct: 240 TQPYNVIKTIDNWKNYPNALIQISDFELSIFVDSKNHLVQSSC 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,567
Number of Sequences: 5004
Number of extensions: 19286
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)