Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C08
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    30   0.86 
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    30   0.86 
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    29   2.0  
06_03_1390 - 29831098-29831514,29831613-29831735,29832238-298325...    27   4.6  
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361...    27   8.0  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = -1

Query: 408 RWEVVVDLFFYRD 370
           +W+V+VDLFFYRD
Sbjct: 198 KWDVMVDLFFYRD 210


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = -1

Query: 408 RWEVVVDLFFYRD 370
           +W+V+VDLFFYRD
Sbjct: 198 KWDVMVDLFFYRD 210


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 407 VGKLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKLRRQFMRNGLRMLNQLHHGLK 240
           VG +  T S +  LK +    NKL   +  L  W    Q++R  +  + Q+  GL+
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLRLNICNVGQIVRGLR 159


>06_03_1390 -
           29831098-29831514,29831613-29831735,29832238-29832501,
           29833313-29833654
          Length = 381

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 338 LRNRLSSLPKWKLRRQFMRNGLRMLNQLHHGLK 240
           L NR      W+LR Q M    R L+ LH GL+
Sbjct: 167 LFNRAHPPLSWRLRLQIMIGAARGLDYLHEGLQ 199


>07_01_0480 +
           3616123-3617506,3618033-3618166,3618578-3618818,
           3618912-3619120,3619234-3619265,3619363-3619474,
           3619609-3619890
          Length = 797

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 291 LAAELPLWERRQPVP*LVALPSHSLQG 371
           L+ ELP W  R PV  +++L ++SL+G
Sbjct: 170 LSGELPAWLGRLPVLAVLSLRNNSLEG 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,028,462
Number of Sequences: 37544
Number of extensions: 143730
Number of successful extensions: 340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)