Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C08
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   27   6.2  
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)              27   8.2  
SB_58034| Best HMM Match : VWA (HMM E-Value=0)                         27   8.2  

>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +3

Query: 78  FTRRSSLGQNLPMTEQRQGQAR*QCSIRLEPDWPSLLVLGLYQM*QEQRVPVLNLQPMMQ 257
           F ++    Q L + +++Q Q R Q   + + +    +     +M Q+Q+  +L LQ   Q
Sbjct: 656 FKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRMA----EMRQQQQQALLRLQQQQQ 711

Query: 258 LVQHSQSIPHELAAELPLWERRQ 326
            VQ  + I  ++  +  L ++RQ
Sbjct: 712 EVQRRKEIQKQMELQQKLQQKRQ 734


>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
          Length = 678

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 348 LPSHSLQGHDRRTSQRQLPNAGH 416
           LPS     H RRTSQR +  + H
Sbjct: 560 LPSRRATHHGRRTSQRSMDGSAH 582


>SB_58034| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1203

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 60   KRRYITFTRRSSLGQNLPMTE 122
            ++RY+T T+R+ L ++L MTE
Sbjct: 1037 EKRYLTETKRAELSKDLEMTE 1057


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,948,623
Number of Sequences: 59808
Number of extensions: 156026
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)