Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C08
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    27   7.2  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    26   9.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 201 YQM*QEQRVPVLNLQPMMQLVQHSQSIPHELAAELPLWERRQPVP*LVALPSHSLQGHDR 380
           YQ  Q+Q+      Q   Q   + QS P +  A  P   +R P+P   +LP  +     +
Sbjct: 503 YQQQQQQQQYQQQHQQSPQFPSYQQS-PQQQQAPPP---QRSPIPLSQSLPPLNSMTQQQ 558

Query: 381 RTSQRQLP 404
           R S +Q+P
Sbjct: 559 RASMQQMP 566


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 LQPMMQLVQHSQSIPHELAAELPLWERRQPVP*LVALPSHSLQGHDRR 383
           L+P+  LV+ S +IPH    E   W+  Q V  +V   +  L+ H  R
Sbjct: 523 LEPVNLLVEDSYAIPHYRLLEKYFWKYGQQVQ-IVINNAPDLRNHTSR 569


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 225 VPVLNLQPMMQ---LVQHSQSIPHELAAELPLWERRQPVP*LVALPSHSLQ 368
           +P++ LQP  Q   L+    S+P      LP   R  P P L ALP   LQ
Sbjct: 328 LPLILLQPSRQALPLILLQPSLPQNQLRSLPAHPRILPRPSLPALPLILLQ 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,852
Number of Sequences: 27780
Number of extensions: 114105
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)