Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C08
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.4  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 335 RNRLSSLPKWKLRRQFMRNGLRM 267
           RNR SSLP +K +   + N L M
Sbjct: 312 RNRFSSLPYYKYKYLNVINALEM 334


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 335 RNRLSSLPKWKLRRQFMRNGLRM 267
           RNR SSLP +K +   + N L M
Sbjct: 312 RNRFSSLPYYKYKYLNVINALEM 334


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 60  KRRYITFTRRSSLGQNLPMTE 122
           + RY+T  RR  L ++L +TE
Sbjct: 41  ENRYLTERRRQQLSRDLGLTE 61


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 279 WIENVEPVASWA 244
           W +NVE +A WA
Sbjct: 337 WDKNVEALAKWA 348


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 168 PDWPSLLVLGLYQM 209
           P+W  L++ GL+ M
Sbjct: 33  PNWTDLVLAGLFTM 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,382
Number of Sequences: 438
Number of extensions: 1549
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)