Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C07
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   2.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   3.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   4.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   4.6  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   8.1  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -3

Query: 345 LYLFISITYK---IQGKIKRYRLQKAQYF 268
           +YLF   TY    IQGK K YR     YF
Sbjct: 308 VYLFCDETYSKAIIQGKAKEYRAITGNYF 336


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 443 GPSV-YRDLRRRGERCLAFAREISSR*EKMSAMIYTSSFPSLIKSKEK*NDTDFKRHNTS 267
           GP V +++LR   ++    + E +SR ++  + I   + PS+   K   NDT F      
Sbjct: 489 GPDVPWQELRSTKDKDYCLSLETNSRLKQQLSSI---TLPSVEYGKLTFNDTTFNFMERR 545

Query: 266 ERNTRVNRR 240
            RN  VN++
Sbjct: 546 PRNFDVNKK 554


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 132 SVARCGGRPRHLTCFEYRWRTLPKLN 55
           S+AR     RHL C +  WR L +L+
Sbjct: 262 SMARTIQTARHLNCQKLEWRALDELD 287


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 217 KSVRETKKATN*KKTYSKFERRAKTHKCVSGAVRRTA*APNVLRIPMEDVTEIE 56
           K  ++TK A       SKFE   +  K +     R+  A   LR+ +ED+ +IE
Sbjct: 460 KENKKTKVAN--ASAQSKFEAVNQLKKFLGSLGNRSLNAREPLRVTLEDIEQIE 511


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 208 RETKKATN*KKTYSKFE 158
           ++TKKATN +K  SKF+
Sbjct: 61  KKTKKATNSRKPLSKFQ 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,293
Number of Sequences: 5004
Number of extensions: 37496
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)