Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C07
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         29   2.7  
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          28   3.6  
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         28   4.7  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)                   27   6.3  

>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 377 IFLLQMLGSARRGAEGHGRLMDPTARNSMWRIGF 478
           +F L ++ S    A GHG + +P ARN+  + GF
Sbjct: 3   LFSLLLIASLTALALGHGYIRNPAARNACKQYGF 36


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 377 IFLLQMLGSARRGAEGHGRLMDPTARNSMWRIGFPN 484
           I  L +L +A     GHG +++P ARN+ + + FPN
Sbjct: 6   ILALSLLCNAVLLVHGHGYMIEPAARNACY-MKFPN 40


>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 377 IFLLQMLGSARRGAEGHGRLMDPTARNSMWRIGF 478
           +F L ++ S    A GHG + +P ARN   + GF
Sbjct: 3   LFSLLLIASLTALALGHGYIKNPAARNVCRKYGF 36


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 341 TSSFPSLIKSKEK*NDTDFKRHNTSE 264
           +SSFP+  K ++K  DT FKR+   E
Sbjct: 481 SSSFPTYAKEQKKLKDTGFKRNGVLE 506


>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
          Length = 967

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 315 IQGKIKRYRLQKAQYFRTEYTC 250
           I  +IKRY +   Q  RT+YTC
Sbjct: 886 IMARIKRYAIDDRQKGRTKYTC 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,907,996
Number of Sequences: 59808
Number of extensions: 282726
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)