Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C07
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.3  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 380 ISSR*EKMSAMIYTSSFPSLIKSKEK*NDTDFK 282
           ISS+ ++    I+T SF   +      N+T+F+
Sbjct: 365 ISSKKDRQELWIFTISFQKYMSGTLNSNETNFR 397


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 13  PPRRYNRCP 39
           PPRR N CP
Sbjct: 340 PPRRKNNCP 348


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 33  LPKKISKNSISVTSSIGIRSTLGA*AVRRTAPLTHLWV 146
           +P KIS  +      +G R+TL     R   PL+  W+
Sbjct: 609 VPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSISWL 646


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 311 KEK*NDTDFKRHNTSERNTRVN 246
           KEK N+ DFK   T + N   N
Sbjct: 517 KEKENEIDFKIEVTEDCNKSFN 538


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 CLLKSVSFYFSLDFISD 327
           C+L S S+   +DF++D
Sbjct: 114 CILSSESYNPQVDFVAD 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,384
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)