Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C06
         (451 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q96NC0 Cluster: Zinc finger matrin-type protein 2; n=28...    59   5e-08
UniRef50_P34670 Cluster: Putative zinc finger protein ZK686.4; n...    49   5e-05
UniRef50_A7PRT8 Cluster: Chromosome chr14 scaffold_27, whole gen...    38   0.076
UniRef50_Q93W87 Cluster: AT3g05760/F10A16_5; n=7; Eukaryota|Rep:...    36   0.54 
UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protei...    31   8.8  

>UniRef50_Q96NC0 Cluster: Zinc finger matrin-type protein 2; n=28;
           Eumetazoa|Rep: Zinc finger matrin-type protein 2 - Homo
           sapiens (Human)
          Length = 199

 Score = 58.8 bits (136), Expect = 5e-08
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = +2

Query: 254 TRPEDHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXPVKRELLKQREYKVDLDSKLGK 433
           T+  D RRKWDKDE+                       PVKRELL+ R+YKVDL+SKLGK
Sbjct: 7   TKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDLESKLGK 64

Query: 434 SVVINK 451
           ++VI K
Sbjct: 65  TIVITK 70


>UniRef50_P34670 Cluster: Putative zinc finger protein ZK686.4; n=4;
           Caenorhabditis|Rep: Putative zinc finger protein ZK686.4
           - Caenorhabditis elegans
          Length = 407

 Score = 48.8 bits (111), Expect = 5e-05
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +2

Query: 266 DHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXP----VKRELLKQREYKVDLDSKLGK 433
           +HRR WD+ E+                            VKRE+L+ REYKVDLDSK+GK
Sbjct: 205 NHRRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGK 264

Query: 434 SVVINK 451
           SVVI K
Sbjct: 265 SVVITK 270


>UniRef50_A7PRT8 Cluster: Chromosome chr14 scaffold_27, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr14 scaffold_27, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 201

 Score = 38.3 bits (85), Expect = 0.076
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 272 RRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXP-VKRELLKQREYKVDLDSKLGKSVVI 445
           RRK+DK+E+                       P V+R+ LK R+Y+VDL+S+LGK+ V+
Sbjct: 13  RRKFDKEEYLERARKREQEACFAKFSSPFSKGPPVQRKPLKHRDYEVDLESRLGKTQVV 71


>UniRef50_Q93W87 Cluster: AT3g05760/F10A16_5; n=7; Eukaryota|Rep:
           AT3g05760/F10A16_5 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 202

 Score = 35.5 bits (78), Expect = 0.54
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 368 PVKRELLKQREYKVDLDSKLGKSVVI 445
           PV+R  LK R+Y VDL+S+LGK+ V+
Sbjct: 46  PVQRAPLKHRDYHVDLESRLGKTQVV 71


>UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protein
           znuA; n=4; canis group|Rep: High-affinity zinc uptake
           system protein znuA - Ehrlichia ruminantium (strain
           Gardel)
          Length = 287

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 138 FIRNHFALNYITNLSTSHSISGKLFSLYHLLKI 236
           +   +F LN+IT+LS+SH+ +  +  L H+ K+
Sbjct: 193 YFEKYFGLNFITSLSSSHNTNISVKKLTHIQKV 225


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,424,903
Number of Sequences: 1657284
Number of extensions: 4103958
Number of successful extensions: 7231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7230
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)