Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C06
         (451 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056668-1|AAH56668.1|  199|Homo sapiens zinc finger, matrin typ...    59   6e-09
AK055683-1|BAB70983.1|  199|Homo sapiens protein ( Homo sapiens ...    59   6e-09

>BC056668-1|AAH56668.1|  199|Homo sapiens zinc finger, matrin type 2
           protein.
          Length = 199

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = +2

Query: 254 TRPEDHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXPVKRELLKQREYKVDLDSKLGK 433
           T+  D RRKWDKDE+                       PVKRELL+ R+YKVDL+SKLGK
Sbjct: 7   TKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDLESKLGK 64

Query: 434 SVVINK 451
           ++VI K
Sbjct: 65  TIVITK 70


>AK055683-1|BAB70983.1|  199|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31121 fis, clone IMR322000742, weakly similar to
           HYPOTHETICAL ZINC FINGER PROTEIN ZK686.4 IN CHROMOSOME
           III. ).
          Length = 199

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = +2

Query: 254 TRPEDHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXPVKRELLKQREYKVDLDSKLGK 433
           T+  D RRKWDKDE+                       PVKRELL+ R+YKVDL+SKLGK
Sbjct: 7   TKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDLESKLGK 64

Query: 434 SVVINK 451
           ++VI K
Sbjct: 65  TIVITK 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,529,257
Number of Sequences: 237096
Number of extensions: 623714
Number of successful extensions: 839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)