Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C04
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 194 CICFYPGQRGVCEHSSQ 144
           CICF PG  G+   S++
Sbjct: 203 CICFVPGVLGLLSRSNK 219


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 194 CICFYPGQRGVCEHSSQ 144
           CICF PG  G+   S++
Sbjct: 203 CICFVPGVLGLLSRSNK 219


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 194 CICFYPGQRGVCEHSSQ 144
           CICF PG  G+   S++
Sbjct: 203 CICFVPGVLGLLSRSNK 219


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 194 CICFYPGQRGVCEHSSQ 144
           CICF PG  G+   S++
Sbjct: 203 CICFVPGVLGLLSRSNK 219


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +2

Query: 110 QVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 253
           + +FK       + +A+K +VV+DK K  + +  + + +   D  C +
Sbjct: 198 KTRFKTINNILENLWAKKLIVVKDKKKSRSDEQTIDICMRCHDQLCDM 245


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 372  CWQEDCCRGSA 404
            CWQ DC +G A
Sbjct: 1949 CWQVDCNKGPA 1959



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 372  CWQEDCCRG 398
            CWQ DC +G
Sbjct: 1524 CWQVDCKKG 1532



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 372  CWQEDCCRG 398
            CWQ DC +G
Sbjct: 2447 CWQVDCNKG 2455


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,474
Number of Sequences: 336
Number of extensions: 2915
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)