Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C04
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   203   1e-53
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   203   1e-53
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.3  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.9  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   9.9  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   9.9  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  203 bits (496), Expect = 1e-53
 Identities = 93/165 (56%), Positives = 115/165 (69%)
 Frame = +2

Query: 62  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 241
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 242 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 421
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 422 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKG 556
           G TE  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKG
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKG 165


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  203 bits (496), Expect = 1e-53
 Identities = 93/165 (56%), Positives = 115/165 (69%)
 Frame = +2

Query: 62  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 241
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 242 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 421
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 422 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKG 556
           G TE  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKG
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKG 165


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 243 VTSLLD-NRTISRYFGVLYLFLSWTTRR 163
           V   LD N  + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 555 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVA----PV*RLSKPSLCN 388
           P  AP + +P+    KP++    N     S+ +   SSP+ S A    PV + S P L  
Sbjct: 395 PSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLP 454

Query: 387 NL 382
            L
Sbjct: 455 TL 456


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 230 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAA 352
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 77  VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 196
           + K +    +YQ   K + E  T  Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 465 TGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRPVQ 358
           TGS   SS V S      +SKPS  N L    +P+Q
Sbjct: 338 TGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQ 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,866
Number of Sequences: 5004
Number of extensions: 48477
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)