Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C04
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         157   6e-39
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             149   2e-36
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   30   1.5  
SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   5.9  
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)                   28   5.9  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   5.9  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.8  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.8  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  157 bits (381), Expect = 6e-39
 Identities = 68/102 (66%), Positives = 80/102 (78%)
 Frame = +2

Query: 251 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGAT 430
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG               +YTG  
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 431 EVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKG 556
           EV GDEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KG
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKG 102


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  149 bits (360), Expect = 2e-36
 Identities = 84/181 (46%), Positives = 106/181 (58%), Gaps = 37/181 (20%)
 Frame = +2

Query: 125 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 214
           RR +GKTDYYARKR                        ++ Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 215 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXX 373
             R   NK          ++AY++++GD ++ +AY+HELP +G+KVGLTNYAAAYCTG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 374 XXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 553
                        +YTG  +V GDEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196

Query: 554 G 556
           G
Sbjct: 197 G 197


>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -1

Query: 508 AYIQVTSECSWAIVNWFNIIFITSDF---SGTCV-ETVQAEPLQQSSCQQQTSAVGSSIV 341
           A +Q TS   WA+  WF    +T  F   SGT V   V+ E +Q S        VG  + 
Sbjct: 132 AQVQDTSRFVWALPGWFGNSEVTRHFRGDSGTSVLIRVKGERVQVSRSSSHGGRVG-GVS 190

Query: 340 SQTHLD 323
             TH D
Sbjct: 191 RSTHRD 196


>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 180 IKTNTTLQSTD*LYGYPIKMLPV-KLHTHALRVITLSVLPTLMNSHAMVSRWV*LTMLLP 356
           IK NT  ++T  L  + ++  PV K H    R + L    TL+N+   V+ W+   +LL 
Sbjct: 333 IKGNTISENT--LSTFRVRNTPVSKQHDDINRALFLE--STLLNTFQNVALWLQKFLLLK 388

Query: 357 TALVC 371
            A+VC
Sbjct: 389 PAMVC 393


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 212 LIVRLSNKDVTCQVAYSRIEGD-HIVC 289
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 388 QSSCQQQTSAVGSSIVSQTHLD--TIAWEFMRVGSTDNVITLNA*VCNLTGNIFI 230
           Q  C   T+  GS IV+   +D   +  E  R+G + NV  L   V  LTG + I
Sbjct: 378 QCLCDHLTAFGGSMIVAPNPIDFNKVFLEMSRLGESGNVAVLATIVSILTGYLVI 432


>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
          Length = 1071

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 436 DFSGTCVETVQAEP-LQQSSCQQQTSAVGSSIVSQTHLDTIAWE 308
           D++G C +T    P L  S C Q+   +GSS    ++   ++ E
Sbjct: 665 DYAGCCPDTYINTPCLHNSGCDQELGVLGSSCSDNSYTQLLSKE 708


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 80  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 175
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 SRIEGDHIVCAAYSH-ELPRYGIKVGLTNYAAAY 358
           ++  GDH+  A+YSH ++ R+ + + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 65   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 151
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 VRLSNKDVTCQVAYSRIEGDHIVCAAY 298
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 VRLSNKDVTCQVAYSRIEGDHIVCAAY 298
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,080,660
Number of Sequences: 59808
Number of extensions: 382738
Number of successful extensions: 1021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)