Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C03
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0084 + 10963076-10963570,10963888-10964845,10964846-109649...    27   6.3  
01_01_0418 - 3142659-3145622                                           27   8.3  

>01_02_0084 +
           10963076-10963570,10963888-10964845,10964846-10964931,
           10965187-10965211,10965544-10965644
          Length = 554

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 59  LSTSLDVNEICISSLLCLDCTALTILGAVQLF 154
           +  +LDVN   ++SL+ + CT   IL A  LF
Sbjct: 199 IKKALDVNLAVVNSLIDMYCTCARILDARSLF 230


>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 141 APNIVSAVQSKHNSDEIH---ISLTSNEVL 61
           APNIVS V + HN  E++   I L+SN ++
Sbjct: 163 APNIVSIVANLHNLKELYMGTIDLSSNSMV 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,608,013
Number of Sequences: 37544
Number of extensions: 146964
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)