Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C03
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71186-5|CAD56578.1|  101|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC024831-5|AAK72076.1|  186|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    26   9.8  

>Z71186-5|CAD56578.1|  101|Caenorhabditis elegans Hypothetical
           protein F23D12.6 protein.
          Length = 101

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 200 LFKYSRTFHISILLGLNFIIKVPYL*CITKLIHFIKLITKCNA*YF-FKCIYY 355
           +F   + FHI  LL LNFI+   +L C+  L+    ++   +A Y+ +   YY
Sbjct: 12  IFTVGKNFHI--LLQLNFIMNAKFLLCVLALV-MCSIVQDASAQYYGYASSYY 61


>AC024831-5|AAK72076.1|  186|Caenorhabditis elegans Hypothetical
           protein Y55F3C.5 protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 156 QNNCT-APNIVSAVQSKHNSDEIHISLTSNE 67
           QN+CT APN ++  +S++N   + ++ TSNE
Sbjct: 20  QNSCTKAPNCLAFTESQYNIAIVFMNNTSNE 50


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 312 INFMKWINFVIHHKYGTLIIKF--KPNKILIWKVLEYLN 202
           +++ +W+  + H  YG L  K+  + NK+L+  V E L+
Sbjct: 418 VSYFEWLKNLNHVSYGRLTFKYDEEANKMLLASVQESLS 456


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 312 INFMKWINFVIHHKYGTLIIKFKPNKILIWKVLE 211
           +NF KW   V   KY  L   +K + I+I KV++
Sbjct: 249 MNFTKWSYDVTSRKYAELKQYYKGDTIMIHKVVK 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,418,779
Number of Sequences: 27780
Number of extensions: 162062
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)