Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C03
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   5.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 369 RLTKQ*YIHLKKYYALHFVINFMKWINFVIHHKYGTLIIKFKPNKILIWKVL 214
           +L ++    +  YY    +I  + W++F +H       I    N IL +  L
Sbjct: 226 KLAREMGFFMMDYYIPSILIVVISWVSFWLHMDASPPRIVLGTNTILTFMTL 277


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 324 LHFVINFMKWINFVIHHKYGTLIIK 250
           +H  +NFM+   FV++ K G+  I+
Sbjct: 532 VHNYMNFMQMDEFVVNLKSGSNTIE 556


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 324 LHFVINFMKWINFVIHHKYGTLIIK 250
           +H  +NFM+   FV++ K G+  I+
Sbjct: 532 VHNYMNFMQMDEFVVNLKSGSNTIE 556


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 324 LHFVINFMKWINFVIHHKYGTLIIK 250
           +H  +NFM+   FV++ K G+  I+
Sbjct: 158 VHNYMNFMQMDEFVVNLKSGSNTIE 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,232
Number of Sequences: 438
Number of extensions: 1965
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)