Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C02
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   155   2e-39
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    49   4e-07
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    42   6e-05
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   3.0  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.3  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   5.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   5.3  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.0  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   9.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  155 bits (377), Expect = 2e-39
 Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
 Frame = +2

Query: 11  FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
           FV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET       
Sbjct: 49  FVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQR 108

Query: 191 XXXXXXXXXXXXD-EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPA 367
                         +   K+P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPA
Sbjct: 109 LVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPA 168

Query: 368 LCRKMGVPYCIVKGTSRQPALVHRKT 445
           LC+KMGVPY IVK  +R   ++H+KT
Sbjct: 169 LCKKMGVPYAIVKNKARLGTVIHQKT 194


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 403
           LR G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFV 80


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 41.5 bits (93), Expect = 6e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +2

Query: 242 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 394
           K+ + LR G   V K V K +  LV++A D+ P++++  +P LC    VPY
Sbjct: 50  KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 50  KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 151
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 63  SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 161
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 375 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 277
           +Q +  KS+  +G T+   TTS +  F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 122 TAKGLFKILEKYR 160
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 402 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 262
           T+     I+  +AG  + T+S+GS+S A T + A   ST  V  +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 414 EVPFTIQYGTPILRQSAGRKSTSSIGS 334
           E+PF      P++R S GRK + S+G+
Sbjct: 537 ELPFKEIILHPLVRDSEGRKMSKSLGN 563


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 191
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 48  KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 170
           K+L   ++ K R Q T SP       P   + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,183
Number of Sequences: 5004
Number of extensions: 30201
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)