Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C02
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 166 6e-42
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 140 5e-34
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 138 2e-33
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 45 3e-05
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 44 7e-05
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 40 0.001
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 40 0.001
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 32 0.18
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 32 0.18
02_04_0134 - 20109610-20109984 31 0.42
01_01_0437 - 3293624-3294029,3294094-3294212 29 1.7
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 3.9
04_04_0620 + 26656072-26656417,26656585-26657396 27 5.2
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 6.9
04_04_0619 + 26652923-26653267,26653440-26654273 27 6.9
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 6.9
01_01_1189 + 9454042-9455655 27 6.9
07_01_0209 + 1544347-1544796 27 9.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 166 bits (404), Expect = 6e-42
Identities = 81/145 (55%), Positives = 101/145 (69%)
Frame = +2
Query: 11 FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
FV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 47 FVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKER 106
Query: 191 XXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 370
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPAL
Sbjct: 107 LLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPAL 165
Query: 371 CRKMGVPYCIVKGTSRQPALVHRKT 445
CRKM VPYCIVKG +R ++VH+KT
Sbjct: 166 CRKMEVPYCIVKGKARLGSIVHKKT 190
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 140 bits (339), Expect = 5e-34
Identities = 73/145 (50%), Positives = 97/145 (66%)
Frame = +2
Query: 11 FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
FVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 48 FVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEA 107
Query: 191 XXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 370
K+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPAL
Sbjct: 108 -----------------KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPAL 150
Query: 371 CRKMGVPYCIVKGTSRQPALVHRKT 445
CRKM +PYCIVKG +R ++VH+KT
Sbjct: 151 CRKMEIPYCIVKGKARLGSIVHKKT 175
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 138 bits (333), Expect = 2e-33
Identities = 68/126 (53%), Positives = 85/126 (67%)
Frame = +2
Query: 11 FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
FV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 31 FVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKE 89
Query: 191 XXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 370
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPAL
Sbjct: 90 RLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPAL 149
Query: 371 CRKMGV 388
CRKM +
Sbjct: 150 CRKMEI 155
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 403
L+ G N TK + + A+ VV+A D +P+E++L LP L VPY V
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFV 81
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 403
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 39.5 bits (88), Expect = 0.001
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 403
L+ G V K + + + L +IA ++ PI+++ +P LC + +PY V
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYV 93
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 403
L+ G V K + + L VIA ++ PI+++ +P LC + +PY V
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYV 93
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 266 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 388
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 266 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 388
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>02_04_0134 - 20109610-20109984
Length = 124
Score = 31.1 bits (67), Expect = 0.42
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 187 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQACREEEGTACGHRS*RRP 339
A+ + R Q C E+ AA + + RW + C CR+ + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 233 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 337
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 63 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 188
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 230 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 340
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 266 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYC 397
G TV L++ KK +++ +AHD+ L P K+ + YC
Sbjct: 1040 GVFTVAGLLKFKKEEILQLAHDLCDEFQALGKPGDAAKIALEYC 1083
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 230 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 340
E P RP + A + +VE +KAQ++ + H +DP
Sbjct: 352 ESPKPRPMSFVAEHPFMFAIVEYEKAQVLFLGHVMDP 388
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 414 EVPFTIQYGTPILRQSAGRKSTSSIGS 334
+VPF Y P++R + GRK + S+G+
Sbjct: 670 DVPFEKVYLHPMIRDAHGRKMSKSLGN 696
>01_01_1189 + 9454042-9455655
Length = 537
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 5 EGFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTL 112
+GF +W RI +K ++ LK P + F + L
Sbjct: 300 DGFAKWRDAFRIDERKEEIEGVLKESPGLESFVERL 335
>07_01_0209 + 1544347-1544796
Length = 149
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 262 RWNQHCYQACREEEGTACGH 321
+W H +C EG++CGH
Sbjct: 87 QWYDHGSNSCSAPEGSSCGH 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,541
Number of Sequences: 37544
Number of extensions: 228850
Number of successful extensions: 659
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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