Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C02
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             178   1e-45
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       120   5e-28
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        50   9e-07
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          44   4e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               32   0.25 
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   1.8  
SB_41102| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)             27   5.3  
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_20460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   9.3  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  178 bits (434), Expect = 1e-45
 Identities = 82/144 (56%), Positives = 103/144 (71%)
 Frame = +2

Query: 11  FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
           FVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET       
Sbjct: 54  FVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKAR 113

Query: 191 XXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 370
                       +E P K+P  ++ G N +T LVE KKAQLVVIAHDVDPIE+V++LPAL
Sbjct: 114 LSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPAL 173

Query: 371 CRKMGVPYCIVKGTSRQPALVHRK 442
           CRKM VPYCIVKG +R   +VH+K
Sbjct: 174 CRKMQVPYCIVKGKARLGKVVHKK 197


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  120 bits (289), Expect = 5e-28
 Identities = 57/103 (55%), Positives = 69/103 (66%)
 Frame = +2

Query: 134 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQL 313
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 314 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGTSRQPALVHRK 442
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKG +R   +VH+K
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKK 106


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +2

Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 406
           LR G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVR 143


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 245 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 403
           +  TLR G   V K + K +   V++A DV PI+++  +P +C    +PY  V
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYV 147


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVP 391
           L  G +   K ++K++A L +++++ D    V  + ALC + G+P
Sbjct: 38  LSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIP 82


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 271 QHCYQACREEEGTACGHRS*RRPNRTCALPASALP*D-GSPVLYREG 408
           +H    C +E+GT C   S +R +R+     +ALP   G+P  Y +G
Sbjct: 381 RHHTDDCHKEDGTTCNQCS-KRHHRSLHSEIAALPKSFGAPTRYNQG 426


>SB_41102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 420 CREVPFTIQYGTPILRQSAGRKSTSS 343
           C  VPF +QY  P++ +S G  S+ S
Sbjct: 103 CIGVPFNMQYTEPVIARSGGETSSIS 128


>SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)
          Length = 228

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 284 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGTSRQ 421
           ++ E K+   +     V PI+ VL      RK G+P  +  G+S++
Sbjct: 77  EVYESKRKYFLSELASVSPIQCVLKYVHEARKRGIPVAVASGSSKK 122


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 162
           S GC T SS S  A  PV PD    + Q  +  L E+ A
Sbjct: 286 SSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYA 324


>SB_20460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 420 CREVPFTIQYGTPILRQSAGRKS 352
           C  VPF +QY  P++ +S G  S
Sbjct: 235 CIGVPFNMQYTEPVIARSGGETS 257


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 37  HPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 162
           HP  S GC T SS S  A  PV PD    + Q     L E+ A
Sbjct: 76  HPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,042,899
Number of Sequences: 59808
Number of extensions: 255343
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)