Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C02
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   171   1e-43
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   156   8e-39
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    83   7e-17
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    63   1e-10
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    48   2e-06
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    38   0.004

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  171 bits (417), Expect = 1e-43
 Identities = 79/145 (54%), Positives = 100/145 (68%)
 Frame = +2

Query: 11  FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
           FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+       
Sbjct: 55  FVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNR 114

Query: 191 XXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 370
                        E   KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPAL
Sbjct: 115 LRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPAL 174

Query: 371 CRKMGVPYCIVKGTSRQPALVHRKT 445
           CRK  VPY I+KG +    +V RKT
Sbjct: 175 CRKYNVPYAIIKGKASLGTVVRRKT 199


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  156 bits (378), Expect = 8e-39
 Identities = 78/145 (53%), Positives = 99/145 (68%)
 Frame = +2

Query: 11  FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXX 190
           FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+       
Sbjct: 55  FVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT--- 111

Query: 191 XXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 370
                            KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPAL
Sbjct: 112 -----------------KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPAL 154

Query: 371 CRKMGVPYCIVKGTSRQPALVHRKT 445
           CRK  VPY I+KG +    +V RKT
Sbjct: 155 CRKYNVPYAIIKGKASLGTVVRRKT 179


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 83.4 bits (197), Expect = 7e-17
 Identities = 35/53 (66%), Positives = 44/53 (83%)
 Frame = +2

Query: 11  FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 169
           FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 158 FVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 26/35 (74%), Positives = 30/35 (85%)
 Frame = +2

Query: 11  FVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 115
           FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 158 FVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +2

Query: 257 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 406
           L+ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVR 84


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGTSRQP-AL 430
           TLR G   V K + + +  + ++A +V PI++   +P +C +  +PY  +    +   A+
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 431 VHRK 442
            HR+
Sbjct: 128 GHRR 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,015,768
Number of Sequences: 27780
Number of extensions: 178097
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)