Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C01
(238 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 38 2e-04
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 34 0.002
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 31 0.027
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 30 0.036
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 0.76
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 1.3
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 24 2.3
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 24 2.3
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 24 3.1
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 23 4.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 23 5.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 23 5.4
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 23 5.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 7.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 23 7.1
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 23 7.1
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 23 7.1
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 23 7.1
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 23 7.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 23 7.1
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 22 9.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 22 9.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 22 9.4
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 37.9 bits (84), Expect = 2e-04
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 96 RCGGYVYAAEQMLARGRGWHKECFKCGDCLKRLDSTN 206
+C V + Q+ G+ WH +CFKC +C K+LD ++
Sbjct: 26 KCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSS 62
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 34.3 bits (75), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 99 CGGYVYAAEQMLARGRGWHKECFKCGDCLKRLD 197
CGG + A + A G+ H +CFKC C + L+
Sbjct: 261 CGGSLRAGRIISASGKKLHPQCFKCDTCSQNLE 293
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 30.7 bits (66), Expect = 0.027
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 96 RCGGYVYAAEQMLA-RGRGWHKECFKCGDCLKRLDSTN 206
RCG E ++ G WHK+CF C C K L+ ++
Sbjct: 21 RCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSD 58
Score = 30.7 bits (66), Expect = 0.027
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 150 WHKECFKCGDCLKRLDSTN 206
+H+ECF+C DC K++ +N
Sbjct: 97 YHRECFRCHDCRKQIIDSN 115
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 30.3 bits (65), Expect = 0.036
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 105 GYVYAAEQMLARGRGWHKECFKCGDC 182
G V + + + A G +H ECF+C DC
Sbjct: 120 GQVISGQYVRALGNIYHLECFRCHDC 145
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 0.76
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 176 AAFETLLVPPPSASQHLLSSVNIAATAWQPSPGGALAITRGSKQAPLS 33
A +T+++ P +A + + +AA +P G A GSK+A ++
Sbjct: 46 ALTKTIVLKPKTAKSQTVVPIILAALETTSTPSGIAAKAVGSKEARMA 93
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 1 GLQNSARGRRTDNGACLEPRVIAKAPPGEGCHAV 102
G + A R D +E ++I + PPGE C V
Sbjct: 58 GYDSEASDREEDT--YIEEQIILRLPPGEDCEYV 89
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 146 PSASQHLLSSVNIAATAWQPSP 81
PSAS+H +I +W P+P
Sbjct: 351 PSASRHTALRTSIPKFSWTPTP 372
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 153 ATPFREPTSAQQRKHSRHSVAALTR 79
+TP EPT Q RK S H+ + R
Sbjct: 381 STPLPEPTPGQPRKVSGHNPPSARR 405
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 32 RTTELVWSPVLSPKRHRVRAATLWRLCLRC 121
R+ EL V VR A LW C RC
Sbjct: 1014 RSAELYQRQVAQVNDLEVRFARLWTQCQRC 1043
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 187 FKQSPHLKHSLCHPL 143
F +PHLK++ C PL
Sbjct: 103 FPLNPHLKYTSCFPL 117
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = +1
Query: 25 RRTDNGACLEP 57
R+++NG+CLEP
Sbjct: 853 RKSNNGSCLEP 863
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 95 TLWRLCLRC*ADVGSR 142
T+W+L L+C +VG R
Sbjct: 82 TIWQLALQCVVNVGIR 97
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 162 TPCATPFREPTSAQQRKHSRHSVAALT 82
TP EPT A H R +A LT
Sbjct: 374 TPRRRDSMEPTYASNEAHRRQLIAGLT 400
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 22.6 bits (46), Expect = 7.1
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 37 CPYVCLVPNS 8
CPY+C++P S
Sbjct: 642 CPYLCVLPKS 651
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 38 TELVWSPVLSPKRHRVRAATLWR 106
T L+W P+ RVR + +W+
Sbjct: 663 TGLLWFPLQHAPSGRVRMSVMWK 685
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 214 SQQLVESSRFKQSPHLKHSLCHPLPR 137
++ ++E S FK+ H+ +C P R
Sbjct: 484 TKDMIEKSNFKRLEHVTVRVCIPFNR 509
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 226 LSGPSQQLVESSRFKQSPHLKHS 158
LS SQ+ ES R ++SP HS
Sbjct: 6 LSSSSQKSFESFRQEESPACNHS 28
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 22.6 bits (46), Expect = 7.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 173 AFETLLVPPPSASQHLLSSVNIAATAWQPSPGGALAITRGSKQAPLSV 30
A+E SAS + + A A+Q + GA T G+K A SV
Sbjct: 347 AYEEASNVADSASSIASNVASGATEAYQGAASGASRFTEGAKTAAESV 394
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 12 FGTRQTYGQRSLFGAPCYRQSATG*GLPRCGG 107
FG T+GQ +FG P A G P G
Sbjct: 518 FGQPSTFGQAPVFGQPSAFGQAPVFGQPSAFG 549
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = -3
Query: 197 VKPF*AVAAFETLLVPPPSASQHLLSSVNIAATAWQP 87
+ PF + L P S+H L V A W+P
Sbjct: 892 ISPFDPLCQSSFLAPQTPVKSKHALPLVEANAPPWEP 928
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -1
Query: 94 GSPHPVALWR*HGAPNKLRC 35
G P P LW+ HG + C
Sbjct: 380 GKPIPFWLWKLHGLGKEFPC 399
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 50 WSPVLSPKRHRVRAATLWR 106
+SP+LSP HR + L R
Sbjct: 353 YSPLLSPSSHRKTSGNLSR 371
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 153 ATPFREPTSAQQRKHSRHSVA 91
ATP R P + QR S++SV+
Sbjct: 200 ATPSRNPVTRLQRIFSQNSVS 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,058,914
Number of Sequences: 5004
Number of extensions: 18559
Number of successful extensions: 60
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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