Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B21
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 28 0.87
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.87
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.2
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 28 1.2
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 1.5
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.7
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 27 2.7
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 3.5
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 26 3.5
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 3.5
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 26 4.7
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 6.2
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 25 6.2
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 6.2
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 8.1
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 8.1
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 0.87
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 22 LSNRCRELERQLESERARHAEDLASLEQELARLRDEM----AAQLREYATLMD 168
L+N+ +LE +LES +A H E+L L + + D++ A++ +EY L +
Sbjct: 213 LTNQ-HQLEIELESTKASHTENLGELTRNWQKAMDDVTEKFASKSKEYEDLQN 264
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 10 KNAALSNRCRELERQLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISLDL 189
K +L + E +RQL+ + EDL + E+EL LR + Q ++ L + L+L
Sbjct: 489 KLTSLQEQNNEFDRQLKEQE----EDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLEL 544
Query: 190 E 192
E
Sbjct: 545 E 545
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 1 ARGKNAALSNR----CRELERQLESERARHAEDLASLEQELARLRDE 129
A+GK AA S R L++ LE +RAR E+ E+E AR+ +E
Sbjct: 232 AKGKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIREEE-ARIAEE 277
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 40 ELERQLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISLDLEIATYRALIE 219
ELE +LES R + L L EL R RDE + T + + + E+ A E
Sbjct: 34 ELEAELESIRNGTCKTLLDLADELRRSRDEELEIAERWRTFLVNRAQEEYEVEMKAAKEE 93
Query: 220 GE 225
E
Sbjct: 94 YE 95
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 52 QLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISL 183
QLE ER + + + SLE++L D Q Y TL D + +L
Sbjct: 525 QLEEERKKLLDQIYSLEKQLLEY-DSQFTQANTYDTLNDPRATL 567
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 79 AEDLASLEQELARLRDEMAAQLREYATLMDIKISLDLEIATYRALIEGE 225
A L + ++++ ++ +EM+ + Y T+ D+K + + Y L+EG+
Sbjct: 259 AYSLKAAQRKVDKILEEMSPEDDSYVTVSDLKSLIASLLTQYDHLLEGD 307
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 413 SPRAPRGISRWPKPAPTDSSS-RLGT 487
+P P G+ P PAPT S S RLG+
Sbjct: 318 APFQPAGVGSVPLPAPTSSQSLRLGS 343
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 367 TLLDESEERSVQD-YSVTASAKGDLEVAEACPDGQFVKIRNKGKKE 501
TL E++E + + Y + S +GD + + +G+ K+R+KG+++
Sbjct: 532 TLSTENKENLIINVYLIPISDEGDETLKKYFSEGEIQKVRSKGQED 577
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 355 ARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRNKGKKEL 504
A K +E + + + + A A LE+ PDG + + N K +L
Sbjct: 297 AEKHNYYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANFSKLKL 346
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 516 PAEAEFLLALVPNLDELSVGAGFGHLEIPLGARGD 412
PA+ EFL+AL D++ + ++ LG GD
Sbjct: 240 PAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD 274
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 1 ARGKNAALSNRCRELERQLESERARHAEDLASLEQELARLRDEMAAQLRE 150
ARGKN+AL R+ R + +R E +E+++ R +L E
Sbjct: 455 ARGKNSALRRYLRKHARNVVDQRRLKVEKSLEIEKKMRAQRVRREQKLPE 504
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 52 QLESERARHAEDLASLEQELARLRDEMAAQLREYATL 162
+++ E D+AS++ E+A ++ EMA + A++
Sbjct: 149 EMKGEMTVMKNDIASIKGEMAEMKGEMAVMKNDIASI 185
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/67 (20%), Positives = 33/67 (49%)
Frame = +1
Query: 25 SNRCRELERQLESERARHAEDLASLEQELARLRDEMAAQLREYATLMDIKISLDLEIATY 204
++ +++ +LES ++ L + EQE + R+ +A + + K++ + E+
Sbjct: 918 ASHLKQVSYRLESRLFEISKQLDNSEQENNKFRERIAELESHLSNYAEAKLAQERELEQT 977
Query: 205 RALIEGE 225
R LI +
Sbjct: 978 RVLISDQ 984
>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 403 DYSVTASAKGDLEV-AEACPDGQFVK-IRN-KGKKELSLGGYSILRKAGDQETVFKFQRT 573
D+S++ SA D + A + F K I+N K +++ YSI AG T+F F
Sbjct: 44 DHSISDSALSDSDKNAFKDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGHGTLFDFPSA 103
Query: 574 VKL 582
L
Sbjct: 104 TNL 106
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 6.2
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +1
Query: 28 NRCRELERQLESERARHAED--LASLEQELARLRDEMAAQLREYATLMDIKISLDLEIAT 201
NR ELE QLE + +ED L SL+QE +++ TLM K +
Sbjct: 228 NRIAELEAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVDTLMKQKANSSTANEK 287
Query: 202 YRALIEGEEDRLNLTTQSPGR 264
+ N + +SP R
Sbjct: 288 LSHMESSSPTLTNASFESPKR 308
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 10 KNAALSNRCRELERQLESERARHAE--DLASLEQEL 111
+N ALS R RELE +L ++++ E +LE++L
Sbjct: 55 RNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKL 90
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 397 VQDYSVTASAKGDLEVAEACPDGQFVKIRNKGKKELSLGGYSILRKA 537
+Q+Y + K D + + P +F K R KG LSL I R A
Sbjct: 41 LQEYLDKEAWKDDTLIIDLRPVSEFSKSRIKGSVNLSLPATLIKRPA 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,318,175
Number of Sequences: 5004
Number of extensions: 17079
Number of successful extensions: 92
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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