Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B20
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    29   0.52 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   2.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   3.7  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   6.4  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.4  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   8.4  

>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 322 LRSRCRFINFERHLVREMRDHLHRHRE 242
           LR R R  N+ R  +RE R H+H + E
Sbjct: 237 LRKRTRTSNYSRMSIREKRKHVHSYDE 263


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 382 LEASNVRGGNDVRTACGRRWL-RSRCRFINFERHLVREMRDHLHRH 248
           +E + V GG   R+  G  +L R   RF+N ER LV  M   LH++
Sbjct: 342 VEINKVEGGT--RSGIGSGFLKRLALRFLNGERDLVLPMYRGLHKN 385


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 401 WMSYSTNISALHDQTTPYHKPGLYAPASPPKP 496
           W + ST++S+      P+ KP   A  S P P
Sbjct: 409 WAAASTSVSSSTSSPAPWAKPASSAAPSNPAP 440


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 144 T*FALPFCCYFYKCFI 191
           T FAL  CCYFY   +
Sbjct: 241 TIFALGLCCYFYPSLV 256


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 157 SANHVFILLIKT*KINRKKRHTRDVCLIKTS 65
           S   +  L  K  K+N KK +  D+ L+KTS
Sbjct: 30  SIEDIHSLASKRKKLNEKKENLEDLTLLKTS 60


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 200 VHSAQQKLQLSDSYLPVAMQVISHLTDQMSFEVDE 304
           ++++Q   Q + SY  +     SH  + + FE+D+
Sbjct: 358 INNSQNSPQSNKSYFSIPGMSTSHFENGLQFEIDD 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,799
Number of Sequences: 5004
Number of extensions: 39882
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)