Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B20
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    29   2.8  
11_01_0609 - 4865229-4865510,4865981-4866144,4866219-4866320,486...    28   3.7  
12_01_0975 + 9814698-9814883,9814930-9815157                           28   4.8  
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879...    28   4.8  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    27   6.4  

>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 382 LEASNVRGGNDVRTACGRRWLRSRCRFINFERHLVREM-RDHLH 254
           L+  NVR   D+ +AC    L  R  F+NF+   ++E+ R+ LH
Sbjct: 209 LQPCNVRMEKDLFSACSNGVLTPRADFLNFQFIWLKELGRELLH 252


>11_01_0609 -
           4865229-4865510,4865981-4866144,4866219-4866320,
           4866674-4867217
          Length = 363

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 213 NKSCNSPTPISLWRCK*SLISRT-RCLSKLMNRHRLRSQRRP 335
           N S  SP P  L R     +SR  RC+SK   +  + SQRRP
Sbjct: 191 NSSSKSPNPPFLMRFLSGEVSRRGRCVSKGQRQLTVISQRRP 232


>12_01_0975 + 9814698-9814883,9814930-9815157
          Length = 137

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 387 YLTAGG*VTVQTFPLCMIKRHLTTSQVCTRQHHHPSRQ 500
           YL+ G     + +  CM   H+ TS VCT  H   + Q
Sbjct: 4   YLSVGFGQVSEEYEPCMYSTHMHTSAVCTAVHVEANTQ 41


>04_04_0823 +
           28383798-28383864,28384475-28384877,28387388-28387932,
           28387978-28388594
          Length = 543

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 354 LPPRTLEASN*YLTAGG*VTVQTFPLCMIKRHLTTS-QVCTRQHHHPS 494
           LPP +L +   +L            L  +  HLTTS Q     HHHPS
Sbjct: 178 LPPTSLSSLTSHLYGASNAGNMALSLSQVGSHLTTSLQDGGGHHHHPS 225


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 197  GVHSAQQKLQLSDSYLPVAMQVISHLTDQMSFEV 298
            G    Q  L L +  LP+  Q IS L DQ++ E+
Sbjct: 907  GHSELQYYLSLMNQQLPIESQFISRLADQLNAEI 940


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,521
Number of Sequences: 37544
Number of extensions: 273840
Number of successful extensions: 749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)